BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0001.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312229|ref|YP_003776321.1| porphobilinogen deaminase [Herb...   197   8e-52

>gi|300312229|ref|YP_003776321.1| porphobilinogen deaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  197 bits (501), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query: 91  AARYPHLVIKPLRGNLDTRLGKLDRGDYAAIILAVAGLKRLGLESRIRSAIAPEQSLPAP 150
           AARYP LV+KPLRGNLDTRL KLDRGDYAAIILAVAGL RLGL++RIRS + P QSLP+P
Sbjct: 140 AARYPQLVVKPLRGNLDTRLAKLDRGDYAAIILAVAGLNRLGLKARIRSFLDPAQSLPSP 199

Query: 151 GQGAMAIEILAERTDLQRVLAPINHLATDRAVTAERTLSRTFGGSCQIPLAAFATIEGDR 210
           GQG +AIEI   R D++R+LAP++         AER++SR FG SCQIPLAA+AT++G R
Sbjct: 200 GQGTLAIEIPEGREDIKRLLAPLHDEPAAVVSAAERSVSRIFGASCQIPLAAYATLDGQR 259

Query: 211 MHMRALVATPDGKQVAAAEADGPAEAPAALGKQIADLLQAQGAAGI 256
           +H+RA++ATPDG   AAAEA+GPA AP ALG Q+A+LL+A+GA  I
Sbjct: 260 LHLRAMIATPDGLHAAAAEAEGPAAAPEALGAQVAELLKARGADDI 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 788,731
Number of extensions: 29537
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)