BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0011.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...    73   6e-15
gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase [H...    69   1e-13

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 72.8 bits (177), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 3   RRWSIFFKIAGLAVFVFVVWSAFNYTKSEAEPVGTHTALVEISGTIEAEGRGSA 56
           RRW +FF+IA LAV V  VW AF + + E EP+G HTALVEI G I++EG+GSA
Sbjct: 56  RRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSA 109


>gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query: 71  GAGAGGVAVEFGAHPVEQLQALNPLYSAGSIKVLHQWLNDNA 112
            AGA GVAVEFGAHP +QLQ L+PLYSA SI+ LHQWL D+A
Sbjct: 178 NAGAAGVAVEFGAHPPQQLQTLSPLYSARSIRELHQWLCDHA 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 242,495
Number of extensions: 4878
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)