BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0009.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...   390   e-110

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  390 bits (1002), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 209/225 (92%)

Query: 26  GFAADDSMGVILKINSPGGSPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAA 85
            FAA+DS+GVILKINSPGGSPVQAGMINDEI RLRK+YPKKP+YVVVEE+CASGGYYIAA
Sbjct: 119 AFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGGYYIAA 178

Query: 86  AADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKE 145
           AADKI+VNKAS+VGS+GVLMDGFGFTGLMDK+GVERRLLTAGENK FLDPFS Q+PKQ+E
Sbjct: 179 AADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPKQRE 238

Query: 146 YAQQMLNEIHQQFIDMVRKGRGQRLKETPETFSGLFWTGSKAVEMGLADGFGTVDSVARD 205
           YAQ ML EIHQQFI++VR+GRG RLKETP+TFSGL WTGSKAVE+GLADGFGTVDSVARD
Sbjct: 239 YAQSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGTVDSVARD 298

Query: 206 VIKAEDLVDYTQTEGLPERVLKKFGVAVGSGVAKSMVGSNGLQLR 250
            IKAED+VDYTQTE L ERVLKKFGVA G+G AK+++ S+  QLR
Sbjct: 299 EIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTVMSSSLPQLR 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 745,412
Number of extensions: 31663
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)