BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0008.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane...   216   1e-57

>gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  216 bits (549), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 127/142 (89%), Gaps = 1/142 (0%)

Query: 33  PGEXNLVRLAHQHGIQVRPLVGPSSLLLAVMSSGLNGQSFAFNGYLPTDAAQRTKRIRQL 92
           PG  NLVRLAHQHGIQVRPLVGPSSLLLAVM+SGLNGQSFAFNGYLPTDA  R+KRIRQL
Sbjct: 114 PG-ANLVRLAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDAEARSKRIRQL 172

Query: 93  EERSRQERQTQLLIETPYRNGAMLEALASACNGSTLISVATDLTLATEAIRTQTAAKWKS 152
           E+RSR+E+QTQLLIETPYRNGAML+ALA +C   TLI VATDL+L TE +RTQTAA+W++
Sbjct: 173 EDRSRKEKQTQLLIETPYRNGAMLDALAQSCQPGTLICVATDLSLPTETVRTQTAAQWQA 232

Query: 153 ELGAGKTPDFHKKPTVFLLLAD 174
            L A + PDFHKKPTVFLLLAD
Sbjct: 233 ALAARQAPDFHKKPTVFLLLAD 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,428
Number of extensions: 14900
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)