BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0006.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311133|ref|YP_003775225.1| hemolysin-adenylate cyclase [He...   169   3e-43

>gi|300311133|ref|YP_003775225.1| hemolysin-adenylate cyclase
           [Herbaspirillum seropedicae SmR1]
          Length = 2656

 Score =  169 bits (427), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 115/151 (76%)

Query: 1   VTMPDQNGSFHLNVPRGAVKHVQVVDVDMVLQLEDGSKVVLAGGAMGAMDEKSKIVFADA 60
           V MPDQ+GSF +N  RGAV+HVQVVDVDMVL + DGSKVVLAGGAM AMD+KSK+ FAD+
Sbjct: 21  VVMPDQSGSFQINANRGAVQHVQVVDVDMVLHMADGSKVVLAGGAMEAMDDKSKVKFADS 80

Query: 61  SQDTGRLLDLVGKIPLRNNDQSLILNSDPVNTQDRANNSDSHGVPENHFTSNNNSAQVNP 120
           S +TG+LLD VGKIPL+ NDQS ILNSDP+   D   + D+H   + H T + N+A V  
Sbjct: 81  SSETGKLLDAVGKIPLKPNDQSRILNSDPIAVADNVASFDAHAQAQPHVTVDRNAASVGS 140

Query: 121 AATSQLAKIIQDNAGSLTSNGLQNLVLPSIP 151
              SQL+KII DNAGSLTSNG QNL +P+ P
Sbjct: 141 DGISQLSKIITDNAGSLTSNGSQNLSVPTQP 171



 Score =  124 bits (312), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 71/91 (78%)

Query: 169 INFDVSVLTSDGLTHLLDSRVVVIKDASSYTDLTYLDPATGKSVWVLPAQGVPHEIHAGD 228
           + F   V TS G   L D R V +KDA++Y DL+YLDPATG  V VLPAQG+PHE+HAG+
Sbjct: 359 LTFTTVVATSLGQLTLNDVRHVALKDATAYGDLSYLDPATGDPVLVLPAQGLPHEVHAGN 418

Query: 229 GGVTIYGSNANDLLYGGVGVDTIIGGSGNTY 259
           GGVTIYGSNANDLLYGG G DTI GGSGNT+
Sbjct: 419 GGVTIYGSNANDLLYGGTGNDTIYGGSGNTF 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,596
Number of extensions: 30310
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)