BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0004.p (342 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 399 e-112 gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 84 2e-17 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 69 4e-13 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 399 bits (1024), Expect = e-112, Method: Compositional matrix adjust. Identities = 218/297 (73%), Positives = 260/297 (87%), Gaps = 1/297 (0%) Query: 1 MNESDQIYVDQPQADLRSLRKDPVYLTLMRAYGGRFVEIVVAGVLINVFGLFMPLYSRLV 60 MN S+Q+++DQPQ L+ LR DP YL+L+RAYG RFVEI+VAG+++NV GL MPLYSRL+ Sbjct: 1 MNASEQVHIDQPQV-LQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLI 59 Query: 61 YDKVIGNHITETLWALTLGMVLFIVLELVLRVIRMYYIEQLAGRFDIEFDGKSVRRLLES 120 YDKVIGNHI ETLWALTLGM+LF+ LELVLR+IR+YY EQLAGR D EFD S RR+L + Sbjct: 60 YDKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTA 119 Query: 121 RVTAPVGVVLAKYRDLSSARDLLSSNYMLMLIDLPFLAMYLVAVGVLGGHLVWVILVGGA 180 RV APVGVVLA+YRDLS+ARDL+SSNYML+L+DLPFL +YLV +G++GGH+VWV+LVGG Sbjct: 120 RVQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGG 179 Query: 181 LLVASQLLCKIPATDYGNAAMTSGIGKIDKLASLVFGMETLKTSPLQDRLVKAFLSDAAD 240 LLV QLL K+P DY N+AM +G GK+DKLAS+V+GMETLKTSPLQ RL++AFL+DA+ Sbjct: 180 LLVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASA 239 Query: 241 NAVSQAKSRFWMNAGYALSTVGYTLISVGTLVVGVYLVEDNALTVGALIATSLLISR 297 NAV+QAKSRFWMN YA+S+VGYTLISV TLVVGVYLVEDN LTVGALIA SLLISR Sbjct: 240 NAVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISR 296 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 24 VYLTLMRAYGGRFVEIVVAGVLINVFGLFMPLYSRLVYDKVIGNHITETLWALTLGMVLF 83 V+L + + +EIVVA V++++ L ++S VYD+VI H TL L +G+ L Sbjct: 162 VFLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVGLA 221 Query: 84 IVLELVLRVIRMYYIEQLAGRFDIEFDGKSVRRLLESRV---TAPVGVVLAKYRDLSSAR 140 I+ EL ++ R + ++++ D + RLL RV VG + + R R Sbjct: 222 ILFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSLAGQLRGYEQIR 281 Query: 141 DLLSSNYMLMLIDLPFLAMYLVAVGVLGGHLVWVILVGGALLVASQLLCKIPATDYGNAA 200 +S + L+DLP ++++ + ++ W+ LV V + L+ + A Sbjct: 282 SFYTSQTLFTLVDLPLGLLFVLVIALIASP--WMALVPTVFGVVAILIGYLSNRKVARLA 339 Query: 201 MTSGIG---KIDKLASLVFGMETLKTSPLQDRLVKAFLSDAADNAVSQAKSR-FWMNAGY 256 S K L V G+ET+K+ + + ++ +A++ S R +AGY Sbjct: 340 DKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGY 399 Query: 257 ALSTVGYTLISVGTLVVGVYLVEDNALTVGALIATSLLISR 297 +T+ S T+++G +LV + +T+GALIA S+L R Sbjct: 400 IAATLQQLSYST-TVIIGAFLVINGQITMGALIACSILGGR 439 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 130/277 (46%), Gaps = 24/277 (8%) Query: 32 YGGRFVEIVVAGVLINVFGLFMPLYSRLVYDKVIGNHITETLWALTLGMVLFIVLELVLR 91 Y E+++ +++ + GL P++ ++V DKV+ NH TL + +G++ V E VL Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 92 VIRMYYIEQLAGRFDIEFDGKSVRRLLESRVT----APVGVVLAKYRDLSSARDLLSSNY 147 IR + + D+E + LL ++ G +A+ R+L + R L+ N Sbjct: 219 GIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNA 278 Query: 148 MLMLIDLPFLAMYL---------VAVGVLGGHLVWVILVGGALLVASQLLCKIPATDYGN 198 M +++D+ F ++L +++ VL V+V+L LV + LL + + Sbjct: 279 MTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLS----LVFTPLLRERLNDKFNK 334 Query: 199 AAMTSGIGKIDKLASLVFGMETLKTSPLQDRLVKAFLSD-AADNAVSQAKSRFWMNAGYA 257 +A L + GM+T+K ++ R + + AA A + + A A Sbjct: 335 SAENQSF-----LVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGA 389 Query: 258 LSTVGYTLISVGTLVVGVYLVEDNALTVGALIATSLL 294 + V L++VG + +G LV N ++VG L+A ++L Sbjct: 390 VGLVS-KLVTVGIMWLGALLVVKNEMSVGELVAFNML 425 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 788,642 Number of extensions: 26649 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 3 Length of query: 342 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 256 Effective length of database: 1,212,660 Effective search space: 310440960 Effective search space used: 310440960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)