BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0013.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillu...   398   e-112

>gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 262

 Score =  398 bits (1023), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 229/262 (87%), Gaps = 7/262 (2%)

Query: 7   KKLILATAVAASFVTSFAHAEDAPKPDNEVTFNAAVVSDYRYRGLTQTRFDPALQVGADY 66
           KKLILATA+AASFV++ A AEDA KPDNE +FNAAVVSDYRYRGLTQTRFDPALQVGADY
Sbjct: 2   KKLILATAIAASFVSTVARAEDA-KPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60

Query: 67  THNPTGLYAGTWLTNIKWIKDTVGNGG-----KGNIEWDLYAGKRGDIGGGFTYDVGGLY 121
           THNPTGLYAGTWLTNIKWIKD           KG+IEWD+Y GKRGDIGGGFTYDVGGLY
Sbjct: 61  THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120

Query: 122 YYYPRNNYANI-AKNANTFELYGQVGYGPAYFKYSQSLTNLFGATNSKYSQYYDLGGNFE 180
           YYYP N  A+  AKNANTFELYGQVGYGP YFKYSQSLTNLFGA NSKYSQY+DLG N E
Sbjct: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180

Query: 181 TYYGVMLGLHLGHQTIHGSPAASSYNDWKIGLSKTFDDLAGITLGVAYVGTDLKDGVSTT 240
           TYYGV+LGLH+GHQ + G+P   SY DWKIG+SKTFDDLAGITLG+AYVGTDLKDGV+TT
Sbjct: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT 240

Query: 241 PASDGSKNVGKNGVVFSLSKTF 262
           PASDG KNVGKNG VFSLSKTF
Sbjct: 241 PASDGLKNVGKNGFVFSLSKTF 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 927,364
Number of extensions: 42839
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 129 (54.3 bits)