BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0011.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309431|ref|YP_003773523.1| ammonium transporter transmembr...   781   0.0  
gi|300309914|ref|YP_003774006.1| ammonium transporter transmembr...   115   6e-27

>gi|300309431|ref|YP_003773523.1| ammonium transporter transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/414 (95%), Positives = 407/414 (98%)

Query: 1   LPGLGLFYGGLVRSKNMLSVLMQCFVIFSLIYILWFVYGYSIAFTEGSAFFGGFDRLFLH 60
           LPGLGLFYGGLVRSKNMLSVLMQCF+IFSLIYILWFVYGYSIAFTEG+AFFGGFDRLFLH
Sbjct: 97  LPGLGLFYGGLVRSKNMLSVLMQCFMIFSLIYILWFVYGYSIAFTEGNAFFGGFDRLFLH 156

Query: 61  GLNGDSTTATFSKGVVIPELSFVAFQGAFAAITVALIIGSFAERVKFSAVIVFSILWFTF 120
           GL GDS T TFSKGVVIPEL FVAFQGAFAAITVALIIG+FAERVKFSAVI+FSILWFTF
Sbjct: 157 GLTGDSNTGTFSKGVVIPELVFVAFQGAFAAITVALIIGAFAERVKFSAVILFSILWFTF 216

Query: 121 SYLPMAHMVWFWPGPDAFTDAAAAEKATAISGWLFQKGALDYAGGTVVHINAAIAGLVGS 180
           SYLPMAHMVWFWPGPDAFTDAAA EKATAISGWLFQKGALDYAGGTVVHINAAIAGLVGS
Sbjct: 217 SYLPMAHMVWFWPGPDAFTDAAAGEKATAISGWLFQKGALDYAGGTVVHINAAIAGLVGS 276

Query: 181 YVIGKRVGYGKEAFKPHSLTLTMVGASLLWFGWFGFNAGSGLEANGGAALSFVNTILATA 240
           YVIGKR+G+GKEAFKPHSLTLTMVGASLLWFGWFGFNAGSGLEANG AAL+FVNTILATA
Sbjct: 277 YVIGKRIGFGKEAFKPHSLTLTMVGASLLWFGWFGFNAGSGLEANGTAALAFVNTILATA 336

Query: 241 AAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGFVGVCGAVVMGLLAGLLCLWGV 300
           AAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGFVGV GAVVMGL+AGLLCLWGV
Sbjct: 337 AAVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGFVGVIGAVVMGLIAGLLCLWGV 396

Query: 301 TGLKKLLGSDDALDVFGVHGVGGILGAILTGVFAAPSLGGTGIYDYVANAVAPDYSIGGQ 360
           +GLKK+LGSDDALDVFGVHGVGGILGAILTGVFAAPSLGGTGIYDYVANAVAPDYSIGGQ
Sbjct: 397 SGLKKILGSDDALDVFGVHGVGGILGAILTGVFAAPSLGGTGIYDYVANAVAPDYSIGGQ 456

Query: 361 VWIQFQGVLTTVILSGVVSFIAYKLVDIVIGLRVTEEEEREGLDISSHGESAYH 414
           VWIQFQGVLTTV+LSGVVSFIAYK+VD+VIGLRVTEEEEREGLDISSHGESAYH
Sbjct: 457 VWIQFQGVLTTVVLSGVVSFIAYKIVDVVIGLRVTEEEEREGLDISSHGESAYH 510


>gi|300309914|ref|YP_003774006.1| ammonium transporter transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 184/411 (44%), Gaps = 59/411 (14%)

Query: 10  GLVRSKNMLSVLMQCFVIFSLIYILWFVYGYSIAFTEGSAFFGGFDRLFLHGLNGDSTTA 69
           G VR KN ++ L++    F++  I++F  GY +A+    +FF G + L        +  +
Sbjct: 34  GTVRKKNQVNALVKILADFAVSTIVYFFIGYYVAYR--VSFFAGAETL--------AQRS 83

Query: 70  TFSKGVVIPELSFVAFQGAFAAITVALIIGSFAERVKFSAVIVFSILWFTFSYLPMAHMV 129
            F       EL    F   FAA   A+I G  AER KF+  +V + +     Y       
Sbjct: 84  GF-------ELVKFFFLLTFAAAIPAIISGGIAERSKFNPQLVATAVLVGLVY------- 129

Query: 130 WFWPGPDAFTDAAAAEKATAISGWL---FQKGALDYAGGTVVHINAAIAGLVGSYVIGKR 186
                   F +  A  +   +  WL   F     D+AG  VVH       L    ++G R
Sbjct: 130 -------PFFEGIAWNQHLGVQAWLAATFDAEFHDFAGSIVVHAVGGWIALPAVLLLGAR 182

Query: 187 VG-YGKE----AFKPHSLTLTMVGASLLWFGWFGFNAGSGLEANGGAALSFVNTILATAA 241
            G Y KE    A  P ++    +GA +L  GWFGFN  S    +    L  +N+++A A 
Sbjct: 183 RGRYSKEGAVAAHPPSNIPFLALGAWILTVGWFGFNVMSAQTLDKMNGLVAMNSLMAMAG 242

Query: 242 AVLSWSFGEWIGKGKPSMLGAASGAVAGLVAITPAAGFVGVCGAVVMGLLAGLLCLWGVT 301
             L       +G+  P    A +G +AGLVA+   +  +   GA+V G +AG + +W  T
Sbjct: 243 GTL---VALLMGRNDPGF--AYNGPLAGLVAVCAGSDLMHPLGALVTGGIAGAIFVWMFT 297

Query: 302 GLKKLLGSDDALDVFGVHGVGGILGAILTGVFAAPSLGGTGIYDYVANAVAPDYSIGGQV 361
             +     DD L V+ +HG+ G+ G +  G+F   +LGG G   +++             
Sbjct: 298 RTQNKWKIDDVLGVWPLHGLCGLWGGLAAGIFGLQALGGRGGVSFLS------------- 344

Query: 362 WIQFQGVLTTVILSGVVSFIAYKLVDIVIGLRVTEEEEREGLDISSHGESA 412
             Q  G +  ++++ +  +I Y L+   +G+R+  E+E EG D++ H  S+
Sbjct: 345 --QLIGSVMGIVIAALGGWIVYGLLKKAVGIRLDPEQEFEGADLAIHKISS 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,252,177
Number of extensions: 53454
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)