BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0001.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...   227   3e-61

>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  227 bits (579), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 104/114 (91%), Positives = 108/114 (94%)

Query: 1   MSIGIVSPQLMHFPEPLPLKNGTALADYVLMYETYGTLNADKSNAVLVCHALNASHHVAG 60
           MSIGIVSPQ+MHF EPLPL+ G+ALADY L YETYGTLNADKSNAVLVCHALNASHHVAG
Sbjct: 1   MSIGIVSPQVMHFAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAG 60

Query: 61  VYQDDPDNVGWWDNMVGPGKSLDTDKFFVIGVNNLGSCFGSTGPMHTNPATGKP 114
           VY DDPDNVGWWDNMVGPGKSLDTD+FFVIGVNNLGSCFGSTGPMH NPATGKP
Sbjct: 61  VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKP 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 434,274
Number of extensions: 15935
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)