BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0018.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb...   245   1e-66
gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr...   169   1e-43
gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ...    72   2e-14
gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb...    65   4e-12

>gi|300312509|ref|YP_003776601.1| arabinose efflux permease
           [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  245 bits (625), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/137 (91%), Positives = 133/137 (97%)

Query: 1   MHWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVSAPAAGMLVSGYALGVAAGAPVLAI 60
           M+WPLFALAVAAFGIGTTEFVIMGLLPDVARDLGV+APAAGMLVSGYALGVAAGAP+LAI
Sbjct: 1   MNWPLFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAI 60

Query: 61  VTAKWQRKRALVGLMCLFILGNVLCAIAPSYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120
           +TAKW RK+ALVGLMCLFILGNVLCA+AP+Y FLMVARVVTAFCHAAFFGIGSVVAAELV
Sbjct: 61  LTAKWPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELV 120

Query: 121 PREKRAQAVALMFTGLT 137
             +KRAQAVALMFTGLT
Sbjct: 121 APQKRAQAVALMFTGLT 137


>gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score =  169 bits (427), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 105/133 (78%)

Query: 5   LFALAVAAFGIGTTEFVIMGLLPDVARDLGVSAPAAGMLVSGYALGVAAGAPVLAIVTAK 64
           L+AL ++AF IGTTEFVIMGLLP+VA +LGVS  +AG+LV+GYALGV  GAP+L   T +
Sbjct: 5   LWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLLTATTGR 64

Query: 65  WQRKRALVGLMCLFILGNVLCAIAPSYNFLMVARVVTAFCHAAFFGIGSVVAAELVPREK 124
             RK  LV LM +F++GN+ CAIAP Y  LM+ RVV +F H AFFG+GSVVA  LVP+EK
Sbjct: 65  LPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVATSLVPKEK 124

Query: 125 RAQAVALMFTGLT 137
           +A A+ALMFTGLT
Sbjct: 125 QASAIALMFTGLT 137


>gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 71.6 bits (174), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%)

Query: 8   LAVAAFGIGTTEFVIMGLLPDVARDLGVSAPAAGMLVSGYALGVAAGAPVLAIVTAKWQR 67
           LA+  F IGT  F+I  LLP +A D G+S P    LV  + L +A  +P+  +++A   R
Sbjct: 29  LALGTFAIGTEGFMIAPLLPRMAADFGMSVPMVASLVVIFTLVLALSSPISTVLSAAMNR 88

Query: 68  KRALVGLMCLFILGNVLCAIAPSYNFLMVARVVTAFCHAAFFGIGSVVAAELVPREKRAQ 127
           +R L+  M  F   N+L A + S+  L+VAR++ A     +    S +A  +V   +R +
Sbjct: 89  RRVLIAAMTAFTAANLLAACSSSFTGLLVARLLMAVAAGLYTPNASALAGAMVAPGQRGR 148

Query: 128 AVALMFTGLTPP 139
           A+A++  G+T P
Sbjct: 149 ALAIVSGGMTSP 160


>gi|300310405|ref|YP_003774497.1| arabinose efflux permease
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query: 7   ALAVAAFGIGTTEFVIMGLLPDVARDLGVSAPAAGMLVSGYALGVAAGAPVLAIVTAKWQ 66
           +LA+  F + T EF+   LL  +A DL VS  AAG  V+  A+  A  AP + ++T    
Sbjct: 41  SLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNID 100

Query: 67  RKRALVGLMCLFILGNVLCAIAPSYNFLMVARVVTAFCHAAFFGIGSVVAAELVPREKRA 126
           RKR ++ L  L ++ N+L   AP+   L+VARV+       F+ + + +A  LVP    A
Sbjct: 101 RKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPDHLFA 160

Query: 127 QAVALMFTGLT 137
           +A++L+ TG++
Sbjct: 161 RAMSLILTGVS 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 474,189
Number of extensions: 17157
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 4
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)