BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0010.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ...   225   1e-60

>gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance
           cation efflux system transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1073

 Score =  225 bits (574), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 126/142 (88%), Gaps = 2/142 (1%)

Query: 1   LRFNELISGVRSDVAVKVFGDDMDVLNDTAAKIAATLGKVPGATEVKVEQSTGLPMLTVK 60
           LRFNELISGVRSDVAVKVFGDDM VLNDTA+KI+A L K+PGATEVK+EQ+TGLPMLTV+
Sbjct: 672 LRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIEQTTGLPMLTVE 731

Query: 61  IDREKTARYGLNIGDVQDTVAMAIGGKEAGTLFQGDRRFDIIVRLPENERNDLDAIKRLP 120
           IDREKTARYGLN+ D+QDTVA AIGGKEAGT+FQGDRRF I+VRLP+  R DL+AI+RLP
Sbjct: 732 IDREKTARYGLNVSDIQDTVATAIGGKEAGTMFQGDRRFGIVVRLPDQARTDLEAIRRLP 791

Query: 121 IPRPQADG--KLSYIPLGEVAD 140
           I  P  +G  ++SY+PLGEVA 
Sbjct: 792 IALPPQEGATRVSYVPLGEVAS 813


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,441
Number of extensions: 18558
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)