BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0005.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ...    62   1e-11
gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra...    59   1e-10
gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ...    57   3e-10

>gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score = 62.0 bits (149), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%)

Query: 16  NSDMAIYTVVIAGVWQSSGFVMALFLAGLRGIDDSIIKAAMVDGASLPTIYRRIVIPALR 75
           ++  A + ++ A +W  + + M LFL GL  ++   ++AA ++GA   T+ R +++P LR
Sbjct: 172 DARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARMEGAKGWTMLRYVILPQLR 231

Query: 76  PVFFSVLLVLGHIAIKSFDLVMALTAGGPPKXS 108
              F   +V    A++SFDL+  +T+GGP + S
Sbjct: 232 STTFMAFVVSIIGALRSFDLISVMTSGGPYESS 264


>gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 2   HDWGFLNFHFDWLVNSDMAIYTVVIAGVWQSSGFVMALFLAGLRGIDDSIIKAAMVDGAS 61
           H   +L   +D+++N   A+  +VIA +W+   +    FLAGL+ I  S+I+AA +DGA 
Sbjct: 138 HVLSWLGLPWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAG 197

Query: 62  LPTIYRRIVIPALRP-VFFSVLLVLGHIAIKSFDLVMALTAGGPPK 106
               +  IV P + P  FF  ++ + +    +F +V A T GGP K
Sbjct: 198 PVKRFFTIVFPLISPTTFFLFVVNVVYAFFDTFVIVDATTHGGPGK 243


>gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%)

Query: 1   MHDWGFLNFHFDWLVNSDMAIYTVVIAGVWQSSGFVMALFLAGLRGIDDSIIKAAMVDGA 60
           +H  G ++ + D+L +   A ++ V A VW+   FV    LAGL+ I  S+ +AA +DGA
Sbjct: 139 LHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAIDGA 198

Query: 61  SLPTIYRRIVIPALRPVFFSVLLVLGHIAIKSFDLVMALTAGGP 104
           +    +R + +P L P+   V+          F L+  LT GGP
Sbjct: 199 TPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGP 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 359,848
Number of extensions: 12244
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 124 (52.4 bits)