BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0004.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra...    59   5e-10
gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ...    55   8e-09

>gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 73  AALADNWLPRLVLSPTIILSLVFVYGFIALTGYLSLTNSRLMPNY-EFAGFDQYTRLFAL 131
           A     WLP L+++P II++L+F +       Y S+        Y EF  FD +  LF  
Sbjct: 5   ARFTSKWLPYLLVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKTLFGD 64

Query: 132 DRWWTAASNLGIFGGLFILLCLAIGLFMAILLDQKIRAEGALRAVYLYPMALSFIVTGAA 191
             +  +     IF  L     LA+ L +A+  D+  R     +   ++P A+S +V G  
Sbjct: 65  PTYLESFRTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVVVGVL 124

Query: 192 WKWILNPGLGL 202
           W ++L+P LG+
Sbjct: 125 WMFLLSPSLGI 135


>gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 85  LSPTIILSLVFVYGFIALTGYLSLTNSRLMPNYEFAGFDQYTRLFALDRWWTAASNLGIF 144
           L+P  +++LV+V   I  T YLS  +   M    F G   Y  LF    ++TA  N  + 
Sbjct: 42  LAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVELFHAPTFYTALKN-NVL 100

Query: 145 GGLFILLCLAIGLFMAILLDQKIRAEGALRAVYLYPMALSFIVTGAAWKWILNPGLGL 202
             L  LL   +GL +A+ L+QK+     +++++  P  LS +V G  + W  +P  GL
Sbjct: 101 WLLMFLLAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGL 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 786,166
Number of extensions: 22662
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)