BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0002.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...    82   4e-17

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 128 ETVALGXGDWAKGEFTTAGKQPGKDYLCVAAPGTDKSYTFNIDSIAMFKVKNPDSQKAQL 187
           E   L  GDWAKGE    G +  + + C  APGT + + ++ D++AMF   N   Q  Q 
Sbjct: 285 EAAMLIMGDWAKGELNAWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMF-AGNYAHQPMQE 343

Query: 188 TLATAIMSPEFQEVFNLNKGSIPV-RPDIPRGKFDSCATKSMDDFAASSKANTLEPSMAH 246
           TLA   MSP  Q  +N  KGSIPV R   P    D CA  S   F+         PS+ H
Sbjct: 344 TLARLTMSPAVQSEYNRIKGSIPVLRAADP--HMDRCARDSWRTFSKGPMWQA--PSLVH 399

Query: 247 GMAVSSAAQGAMFDVIAK-FMNSNMTSQAAVQALAKAAKT 285
            MA     + A+   + + FM+ +++ + A + LA  A+T
Sbjct: 400 RMATDDTTKDAIVAEVQRFFMDRSISEEQAQKRLATIART 439



 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query: 38  IDSAATAGKWDSLLPKSVSSVMKYQGHYVAAPVNVHRVNWLWINPDVLKKAGAKTPTTWD 97
           +D+ A  G W+  +  +V S++   GH VAAP+ +HR+N L+ N  V K+     P TWD
Sbjct: 132 LDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFKRYNLSPPKTWD 191

Query: 98  EFFDAAEKIKKAGFVAVAHGGQPWQDATVFETVAL 132
           EF    +K++ +G V +A   + WQ AT+FE +AL
Sbjct: 192 EFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLAL 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,880
Number of extensions: 33127
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)