BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0010.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310358|ref|YP_003774450.1| methionine aminopeptidase [Herb...   159   2e-40
gi|300311492|ref|YP_003775584.1| methionine aminopeptidase [Herb...   135   3e-33

>gi|300310358|ref|YP_003774450.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  159 bits (402), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 3   VSIKTEKQIAMMRVAGGLAAEVLEMIGEYVVPGVSTEELDRRCHDYIRKVQKATPANVGY 62
           V ++   +IA  RVAG LAAEVL ++ E+V  GV+T+ELDR CHD+I +VQKATPAN+GY
Sbjct: 4   VKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVQVQKATPANIGY 63

Query: 63  HGFPKTLCTSINAVVCHGIPSTRDVLKDGDIINIDVTVIKDGWHGDTSRIXFENFPVAAA 122
           HGFPKT+C+S+N V+CHGIP  + VLKDGDIINIDV VIKDGW+GD SR+ F   P A A
Sbjct: 64  HGFPKTICSSVNEVICHGIPGGQ-VLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNATA 122


>gi|300311492|ref|YP_003775584.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  135 bits (339), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 90/125 (72%), Gaps = 6/125 (4%)

Query: 3   VSIKTEKQIAMMRVAGGLAAEVLEMIGEYVVPGVSTEELDRRCHDYIRKVQKATPANV-- 60
           ++IKT + I  MRVAG LAAEVL+ I  +V PGV+T E+DR CH+Y+  VQ + PA +  
Sbjct: 4   ITIKTAEDIEGMRVAGRLAAEVLDYITPFVKPGVTTGEIDRLCHEYMTNVQGSIPAPLNY 63

Query: 61  ---GYHGFPKTLCTSINAVVCHGIPSTRDVLKDGDIINIDVTVIKDGWHGDTSRIXFENF 117
              GY  +PK +CTS+N V+CHGIP  + V+K+GD++NIDVT+IKDG+HGDTSR+ F   
Sbjct: 64  CPPGYTPYPKAICTSLNDVICHGIPGDK-VMKNGDVLNIDVTIIKDGYHGDTSRMFFLGE 122

Query: 118 PVAAA 122
           P   A
Sbjct: 123 PSILA 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,214
Number of extensions: 19444
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)