BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0003.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   201   2e-53
gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...    69   8e-14

>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  201 bits (510), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 99/102 (97%)

Query: 1   MGFCSDDQYEEFFRSAPEFERMLVRSGIQLIKYWFSITDEEQHMRFLSRIHDPLKQWKLS 60
           MGFCSD+QYEEFFRS PEFERML R+GIQ+IKYWFSITDEEQH+RFLSRIHDPLKQWKLS
Sbjct: 155 MGFCSDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLS 214

Query: 61  PMDLESRRRWEDYTRAKEVMLERTHIAEAPWWVVQAVDKKKA 102
           PMDLESRRRWE+YT+AKEVMLERTHI EAPWWVVQAVDKKKA
Sbjct: 215 PMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKA 256


>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score = 69.3 bits (168), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 4   CSDDQYEEFFRSAPEFERMLVRSGIQLIKYWFSITDEEQHMRFLSRIHDPLKQWKLSPMD 63
             D + +  +R   +FERML  +G  ++K++  I+  EQ  R  SRI DP K WK  P D
Sbjct: 140 IDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQD 199

Query: 64  LESRRRWEDY-TRAKEVMLERTHIAEAPWWVVQAVDK 99
           L  R+ W+ Y TR +EV L  T    APW+VV A  K
Sbjct: 200 LAERKFWDAYQTRYQEV-LRATSTLHAPWYVVPADSK 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 349,286
Number of extensions: 11587
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)