BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0017.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724...   197   6e-52
gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-...   154   1e-38

>gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  197 bits (502), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 115/154 (74%), Gaps = 9/154 (5%)

Query: 109 GAGKKALVIGGGAPNSTLIAGALTAFLDEGIEFDVISASGAGVLMGLLYQAPLGCTAREA 168
           G  KKALVIGGGAPNSTLIAGAL AFL EGIEFDVISASGAGVLMGLLY AP     REA
Sbjct: 6   GRKKKALVIGGGAPNSTLIAGALAAFLAEGIEFDVISASGAGVLMGLLYTAPRDVGPREA 65

Query: 169 LVRWAEVGVADSIYKMFPVNYKIFNKPGHGARSFRDQVPAQMPQMPQLAGLPNMSGAAGN 228
           L++WAEVGVADSIYK+FPVNYK+F KPG  A S+R+ + AQM Q+P         G   +
Sbjct: 66  LMKWAEVGVADSIYKLFPVNYKVFKKPGAQAESYRESMLAQMQQLP---------GLGAH 116

Query: 229 PFLDVFTQRFAEASGAWNDWMHLMLSAIDERRRH 262
            F D+FT+ FA+AS  WNDWMHL++SA+     H
Sbjct: 117 AFTDMFTRHFADASAKWNDWMHLLMSALSPSDLH 150


>gi|300310700|ref|YP_003774792.1| dihydrodipicolinate
           synthase/N-acetylneuraminate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 306

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 86/102 (84%)

Query: 1   MIMPPYHGATIRVGERGIQEFFQTVSDAIDIPIMIQDAPVSGTTLSSTLLVKMAQEIANV 60
           M+MPPYHGAT RV E+ I EF++ VSDAIDIPIMIQDAPV+GT LS+  L +MA+EI  V
Sbjct: 105 MVMPPYHGATFRVPEKQIYEFYKHVSDAIDIPIMIQDAPVAGTPLSAPFLARMAKEIEQV 164

Query: 61  SYFKIEVPQAANKLREIIALGGDAIVGPWDGEEAITLMADLD 102
           SYFKIE   AA+KLR++I LGGDA+VGPWDGEEAITL+ DLD
Sbjct: 165 SYFKIETAGAASKLRDLIELGGDAVVGPWDGEEAITLIPDLD 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 848,077
Number of extensions: 32752
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)