BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0016.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724...   536   e-153

>gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  536 bits (1381), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/372 (70%), Positives = 299/372 (80%), Gaps = 11/372 (2%)

Query: 9   KKALVIGGGAPNSTLIAGALTAFLDEGIEFDVISASGAGVLMGLLYQAPLGCTAREALVR 68
           KKALVIGGGAPNSTLIAGAL AFL EGIEFDVISASGAGVLMGLLY AP     REAL++
Sbjct: 9   KKALVIGGGAPNSTLIAGALAAFLAEGIEFDVISASGAGVLMGLLYTAPRDVGPREALMK 68

Query: 69  WAEVGVADSIYKMFPVNYKIFNKPGHGARSFRDQVPAQMPQMPQLAGLPNMSGAAGNPFL 128
           WAEVGVADSIYK+FPVNYK+F KPG  A S+R+ + AQM Q+P         G   + F 
Sbjct: 69  WAEVGVADSIYKLFPVNYKVFKKPGAQAESYRESMLAQMQQLP---------GLGAHAFT 119

Query: 129 DVFTQRFAEASGAWNDWMHLMLSAMSPSDLSSKSLGLCAHHPFLEQAIDFDAIARMKPEF 188
           D+FT+ FA+AS  WNDWMHL++SA+SPSDL S SLGLCAH PFLEQ+IDF A+  M+PEF
Sbjct: 120 DMFTRHFADASAKWNDWMHLLMSALSPSDLHSGSLGLCAHLPFLEQSIDFTAVPAMRPEF 179

Query: 189 YINAYNMSKSEMQVWDKNEIAPIHVRAALSFPFLYPPTEIGGDDYIEGAALDTLNFNPLM 248
           YINAYN+ +  MQ+W+K++I P HVRA+LSFPFLY PTEI G+ YIEGAALDTLNF P +
Sbjct: 180 YINAYNIDRHRMQIWNKDQITPAHVRASLSFPFLYAPTEIDGEHYIEGAALDTLNFTPFI 239

Query: 249 TSGD-NPGKHGDIDTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKISKTEMRLFELE 307
              D +P   GD+DTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKISK E RLFELE
Sbjct: 240 AGEDGSPAPAGDVDTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKISKAEQRLFELE 299

Query: 308 HNTHPDTGEPLRRLLKVDLMSGIPEEHWPEVLDWSASNMQLLFDVGYRAGKEFCREHGES 367
           HNT   TG+P R++LKVDLM G+PE HWP+VLDWS+SNMQLLFDVGYRAG  FCREHG+ 
Sbjct: 300 HNTDAATGKPRRQVLKVDLMEGVPESHWPQVLDWSSSNMQLLFDVGYRAGVAFCREHGDV 359

Query: 368 LRDALEGAPLAA 379
           L D      LAA
Sbjct: 360 L-DPQRATALAA 370


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,312,976
Number of extensions: 58146
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)