BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0015.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724...   154   1e-38
gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis tra...   123   3e-29

>gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 83/100 (83%), Gaps = 1/100 (1%)

Query: 106 EIGGDDYIEGAALDTLNFNPLMTSGD-NPGKHGDIDTLVVLDILGEDRLIRKPRNLYDAW 164
           EI G+ YIEGAALDTLNF P +   D +P   GD+DTLVVLDILGEDRLIRKPRNLYDAW
Sbjct: 218 EIDGEHYIEGAALDTLNFTPFIAGEDGSPAPAGDVDTLVVLDILGEDRLIRKPRNLYDAW 277

Query: 165 VRSIITPLVKISKTEMRLFELEHNTHPDTGEPLRRLLKVD 204
           VRSIITPLVKISK E RLFELEHNT   TG+P R++LKVD
Sbjct: 278 VRSIITPLVKISKAEQRLFELEHNTDAATGKPRRQVLKVD 317


>gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 548

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 77/92 (83%)

Query: 1  MTITKRLILTLSVALLALLFVGVDGLWQLQRAQQRFDTVQNRIIPSISGLNAAKGFLADT 60
          MTITKRLI+TLS ALLALLFVG DGLWQLQRAQQR + +QNRIIP +  LN  KG+LAD+
Sbjct: 1  MTITKRLIITLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60

Query: 61 RLAGYRLSVFSNLSDKTALDKAVADANKAFDD 92
          RLAGYRLSVF+NLSDK+ L KAV  ANK  D+
Sbjct: 61 RLAGYRLSVFANLSDKSGLQKAVDTANKLLDE 92


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 704,771
Number of extensions: 23003
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)