BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0004.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate ...    74   1e-14
gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol hy...    73   2e-14
gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol hy...    67   2e-12

>gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 1   MDIEFEGFTWPERFLVFATPYDLREQGFTGNAYIADPDEWCAIFIQPHQGPPGIWRIAFP 60
           + + +EG T P +++V     D  +  +T  A   +P         P+    G+ R  F 
Sbjct: 186 LKLPYEGKTHPAKWVVIECDGDPLDAPYT--ALHCEPQRPYVCLALPY----GVRRWEFM 239

Query: 61  TLPEMDEEQILSDEFVQSRIQGFLSPDQTYDIAYRSVYRVHQRVASTFRVGRVLLAGDSA 120
             P  D EQ+L+ E V+  ++  +      +I    VY  + RVA +   GR+ LAGD+A
Sbjct: 240 LFPGEDGEQMLAPEKVRELLREHVRDVDALNIIRARVYTHNSRVAGSLVCGRICLAGDAA 299

Query: 121 HVNNPLGGMGLNSGIHDAVNLTEKLVAVLADPQRGDDLDLYVRQR 165
           H+  P  G GLN+G+ DA NL  KL  VL    + + L  Y  +R
Sbjct: 300 HITPPWIGQGLNAGLRDAFNLAWKLAWVLQGRMKPELLASYHEER 344


>gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 589

 Score = 72.8 bits (177), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 1   MDIEFEGFTWPERFLVFATPYDLREQGFTGNAYIA-DPDEWCAIFIQPHQGPPGIWRIAF 59
           M +E +G T+ +RFL+     D     F    +   DP       +  H+ P  +WRI F
Sbjct: 198 MGLESQGHTFRDRFLIADVKMD---APFPAERWFWFDPPFHPQQSVLLHRQPDDVWRIDF 254

Query: 60  PTLPEMDEEQILSDEFVQSRIQGFLSPDQTYDIAYRSVYRVHQRVASTFRVGRVLLAGDS 119
               + D     + E V  R++  L  + ++ + + SVY         FR GRVL  GD+
Sbjct: 255 QLGWDADPVLEKTPERVIPRVRALLGEEVSFSLEWVSVYTFSCVRMERFRHGRVLFVGDA 314

Query: 120 AHVNNPLGGMGLNSGIHDAVNLTEKLVAVLADPQRGDDLDLYVRQR 165
           AH  +P G  G NSGI DA NL  KL  VL        LD Y  +R
Sbjct: 315 AHCVSPFGARGANSGIQDAENLAWKLAHVLQGKAPDSLLDSYASER 360


>gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 57/118 (48%)

Query: 48  HQGPPGIWRIAFPTLPEMDEEQILSDEFVQSRIQGFLSPDQTYDIAYRSVYRVHQRVAST 107
           H+    +WRI F    E D E+    E V  RIQ  L  +  +++ + SVY+   R    
Sbjct: 238 HKQCDNVWRIDFQLGWEADPEEEKKPEKVIPRIQAMLGKEVEFELEWVSVYQFACRRIDK 297

Query: 108 FRVGRVLLAGDSAHVNNPLGGMGLNSGIHDAVNLTEKLVAVLADPQRGDDLDLYVRQR 165
            R  RVL AGD+AH  +P G  G N+G+ D  NL  KL  V+        +D Y  +R
Sbjct: 298 MRYQRVLFAGDAAHQVSPFGARGANTGVQDIDNLVWKLKLVIDGKAPPSFIDSYHEER 355


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,296
Number of extensions: 32948
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)