BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0001.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro...    87   4e-19
gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra...    83   9e-18
gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro...    81   3e-17
gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis tra...    80   8e-17
gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p...    74   7e-15

>gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score = 87.4 bits (215), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%), Gaps = 7/82 (8%)

Query: 8   IALAVGAL-------LSVLLSRSIVRPLKHAVDIAKTVASGDLGARITVLAKDETGQLLQ 60
           ++LAVGAL       L+VL +RSI +P++ AV IAKTVA+GDLG+RI V  KDETG+LLQ
Sbjct: 179 LSLAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQ 238

Query: 61  ALKEMNGNLLNTVTEVRDASTT 82
           ALKEMN +L   V  VR+ S T
Sbjct: 239 ALKEMNASLQKVVGGVREGSDT 260


>gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 533

 Score = 82.8 bits (203), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 55/74 (74%)

Query: 4   SLAVIALAVGALLSVLLSRSIVRPLKHAVDIAKTVASGDLGARITVLAKDETGQLLQALK 63
           +L  I + +GA L+ LL+RSI RPL  AV IA+TVA+GDL +RI   ++DETG+LL ALK
Sbjct: 192 ALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALK 251

Query: 64  EMNGNLLNTVTEVR 77
            MNGNLL+ V  VR
Sbjct: 252 TMNGNLLDIVGRVR 265


>gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 571

 Score = 80.9 bits (198), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 4/82 (4%)

Query: 1   VMSSLAVIALAVGALLSVLLSRSIVRPLKHAVDIAKTVASGDLGARITVLAKDETGQLLQ 60
           ++++  V+A+A    LS  ++R + RPL +AVDIA+ VA+GDL A I    +DETGQLL+
Sbjct: 196 LVTTCVVLAMA----LSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLE 251

Query: 61  ALKEMNGNLLNTVTEVRDASTT 82
           AL++MNGNLLN V EVR  + T
Sbjct: 252 ALRQMNGNLLNIVREVRQGTDT 273


>gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis
           transducer transmembrane protein I [Herbaspirillum
           seropedicae SmR1]
          Length = 547

 Score = 79.7 bits (195), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 13  GALLSVLLSRSIVRPLKHAVDIAKTVASGDLGARITVLAKDETGQLLQALKEMNGNLLNT 72
           G +++ LL+RSI RPL  AV +A++V SGDLG+RI V +KDE GQL+ ALK MN +L+N 
Sbjct: 205 GGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIEVTSKDELGQLMSALKGMNDSLVNI 264

Query: 73  VTEVRDASTT 82
           V EVR  + T
Sbjct: 265 VGEVRQGTDT 274


>gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 73.6 bits (179), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 48/66 (72%)

Query: 12  VGALLSVLLSRSIVRPLKHAVDIAKTVASGDLGARITVLAKDETGQLLQALKEMNGNLLN 71
           +G  L++ ++R I RPL+ AVDIA+ VA GDLGA+I V +KDETGQL+QAL  MN  L  
Sbjct: 204 IGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQVQSKDETGQLMQALDTMNEGLRK 263

Query: 72  TVTEVR 77
            V +VR
Sbjct: 264 VVGQVR 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 286,248
Number of extensions: 9306
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 29
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 29
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)