BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0025.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine ...   193   2e-50
gi|300311774|ref|YP_003775866.1| two component sensor histidine ...    93   4e-20
gi|300313027|ref|YP_003777119.1| two component transmembrane sen...    63   4e-11

>gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 443

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 144/193 (74%)

Query: 11  SQHQLLLRLFWMRCVTTLAQALLVAGAIYGMELSLPLAPLCIVLGLMLVFNGLTWWRMRL 70
           +QH LL RLFW+R      + L++AGA   + ++LP+  L  ++GL  + NG TW R+R 
Sbjct: 16  TQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRW 75

Query: 71  AQPVREPELFFQLCIDVTALSALLYFTGGATNPFVSFYLPALAVAAAVLPSPYAFGLALY 130
            +P  + ELF QL +D+  L+ALLYF+GG+TNPFVSFYLPALA  AA L  PYA  LAL 
Sbjct: 76  TRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALC 135

Query: 131 SLVCYSALTYLYRPLHIHDQDQAMAYHLAGMWVNFVMSAALITWFVTRMSATVRSRDTQL 190
           +L  YS L Y+Y PLHIHDQ QAMAYHLAGMW+NF +SA LITWFV+R++A VRSR+T+L
Sbjct: 136 ALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETEL 195

Query: 191 ARAREQQLQDERI 203
           ARARE+QLQ +RI
Sbjct: 196 ARARERQLQSQRI 208



 Score = 95.1 bits (235), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 75/113 (66%), Gaps = 3/113 (2%)

Query: 221 IGQIMQTLLDNAAQAVAE---NGKVDVVLSLQKDAVANPAANSAIIRVADDGPGIAPELL 277
           + QI+ TLLDNAA AV E    G+V + +    +    PA  +AII +AD+G GIAPELL
Sbjct: 323 LSQILLTLLDNAAHAVRERGSEGRVSIRMRAADEPAGRPAQKAAIIEIADNGSGIAPELL 382

Query: 278 KRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTLATANAGGACATLVLPLMA 330
           +RLG  PV SS+GG GIGLMLAFA+A  +GGKL L +    G CA L LPL A
Sbjct: 383 QRLGRAPVASSSGGSGIGLMLAFASAAHLGGKLRLYSTPGQGTCAELRLPLSA 435


>gi|300311774|ref|YP_003775866.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 8/196 (4%)

Query: 13  HQLLLRLFWMRCVTTLAQALLVAGAIYGMELSLPLAPLCIVLGLMLVFN---GLTWWRMR 69
           HQ +L L  +R +  L Q   +A  +   +L LPL  +  VL  ++ FN    L W   R
Sbjct: 30  HQNMLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHLRWHERR 89

Query: 70  LAQPVREPELFFQLCIDVTALSALLYFTGGATNPFVSFYLPALAVAAAVLPSPYAFGLAL 129
           +A      ELF  L +DV  L+  LY +GG TNPF   YL  + ++A +L    ++ +  
Sbjct: 90  IAT---NAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVG 146

Query: 130 YSLVCYSALTYLYRPLHIHDQDQA--MAYHLAGMWVNFVMSAALITWFVTRMSATVRSRD 187
            +++C + L     PL +     A  ++ ++ G  + F+++A L+ +F+TR+S+ +R+ D
Sbjct: 147 VTMLCLAGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGD 206

Query: 188 TQLARAREQQLQDERI 203
             LA  R++  +++ I
Sbjct: 207 ALLADLRQRAAEEDHI 222


>gi|300313027|ref|YP_003777119.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 216 CDQQLIGQIMQTLLDNAAQAVAENGKVDVVLSLQKDAVANPAANSAIIRVADDGPGIAPE 275
           C    + Q+   LL NAAQA++E G V +  +   D V+        + ++D G GIAPE
Sbjct: 329 CLASELNQVFMNLLVNAAQAISERGTVTICTARAGDKVS--------VSISDTGHGIAPE 380

Query: 276 LLKRLGYEPVRSST---GGKGIGLMLAFATARQMGGKLTLATANAGGACATLVLPLMAPD 332
            L R+ +EP  ++     G G+GL L++   ++ GG + +++A   G   T+ LP+  P 
Sbjct: 381 NLNRI-FEPFFTTKPVGSGTGLGLSLSYGIVKKHGGDIRVSSAPGCGTTFTIELPI-DPA 438

Query: 333 RLLPNQKISQGSNE 346
            +L     ++ S E
Sbjct: 439 SVLAQSSATETSGE 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,052,827
Number of extensions: 42061
Number of successful extensions: 323
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)