BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0024.p (797 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 603 e-173 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 275 7e-75 gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 245 8e-66 gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 117 5e-27 gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iro... 69 1e-12 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 603 bits (1556), Expect = e-173, Method: Compositional matrix adjust. Identities = 300/496 (60%), Positives = 370/496 (74%), Gaps = 2/496 (0%) Query: 1 VGFLGNKDFLETPFNSIAYTEQLIKDQQAKGVGDVLLNDPTIRVTRGYGNYQESYMIRGF 60 +G LGN D L++P S+AYT+QLI DQQA GVGDVL NDP +R TRG+GN+QESYMIRGF Sbjct: 71 LGVLGNVDNLDSPVRSVAYTQQLIADQQAHGVGDVLKNDPVVRTTRGFGNFQESYMIRGF 130 Query: 61 ITNSDDLAYNGLYGLLPRQYVAAEMLERVEVFRGASAFLNGATPGGNAIGGTINLLPKRA 120 I NSDDL YNGL+G+LPRQYVA+EM+ERVEV GASAFLNGATPG +GGTIN++PKRA Sbjct: 131 IANSDDLMYNGLFGILPRQYVASEMMERVEVQYGASAFLNGATPGDAGLGGTINIVPKRA 190 Query: 121 SSEPTTQFTAGIESGGQTYMAADIGRRFGPDDRLGLRLNAVRRAGGTAVDNENRELNMAT 180 ++EP T T G ESG Y A D+ RRFGP +RLG+R+NA R AGGT V NE RE N+ + Sbjct: 191 ANEPLTDLTLGYESGNSQYAALDVSRRFGPQERLGVRINAARHAGGTGVANERRETNLFS 250 Query: 181 IGVDYRGNGFRLSADLGLQEYNLSATRPSVRIATAPAGYVPSVPGASTNYGQKWFYSNER 240 +GVDYRGN FRLSADLGLQE NLS RPSV I A +P P S NYGQ W YSN R Sbjct: 251 LGVDYRGNDFRLSADLGLQENNLSNVRPSVTIG-AGLTSLPVAPSGSANYGQPWSYSNAR 309 Query: 241 DLFGTVRGEWDLAQDVTSWFALGMRQGTENNSLATPNV-NAANGNFTSNRFDNSREDYVW 299 DLFGTVRGEWDL+ T+W A G RQGTENNSL+ V NA+ G + RFDN+R+D V Sbjct: 310 DLFGTVRGEWDLSSSTTAWAAFGARQGTENNSLSGVRVTNASTGAAATYRFDNARQDDVA 369 Query: 300 TGEVGIRGKFATGALKHSVSASASSYWQDSRNAYAMSTNVATTGNLYSPGSSAQPALNFF 359 TGEVG+R TGA+ H + A+AS+Y +SRNAY +S + A NLY+P + AQPAL Sbjct: 370 TGEVGVRTHLQTGAVSHKLVAAASAYSLNSRNAYGLSPSYALATNLYNPTNYAQPALTSL 429 Query: 360 GGSLANPQTTIKTQLSSIALADTLSVLEDRLQLTLGGRYQRLKTINYDFNTHLQGDYYNN 419 G SLA+PQTTIKT L S ++DTL +DR+ +T+G R Q+LK+ Y +NT +Y+ Sbjct: 430 GNSLADPQTTIKTNLLSAVVSDTLGFYDDRVLVTVGVRQQQLKSDTYAYNTQANTAHYDQ 489 Query: 420 GTVTPVAGLVYKLTKEVSLYGNYIEGLQPGTKVSDTTATNFGAMLAPYKSKQKEVGVKYD 479 +P+AG+V+KLTK +S+YGNYIEGLQ G +++DTTA N+G +LAPYKSKQKEVGVKY+ Sbjct: 490 SATSPMAGVVFKLTKTLSVYGNYIEGLQQGKQITDTTAANYGQVLAPYKSKQKEVGVKYE 549 Query: 480 AGKIGLTVAVFSIEKP 495 G +GL A F+ ++P Sbjct: 550 LGGLGLGAAFFTTDRP 565 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 275 bits (704), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 175/509 (34%), Positives = 275/509 (54%), Gaps = 21/509 (4%) Query: 1 VGFLGNKDFLETPFNSIAYTEQLIKDQQAKGVGDVLLNDPTIRVTRGYGNYQESYMIRGF 60 +G LGN+ ++ P ++ YT +L++DQQA+ V D +LND +IR+ G + E+Y IRG+ Sbjct: 139 LGVLGNRAVMDIPLATLNYTNELLQDQQARTVADAVLNDASIRMLTSTGGFGETYQIRGY 198 Query: 61 ITNSDDLAYNGLYGLLPRQYVAAEMLERVEVFRGASAFLNGATPGGNAIGGTINLLPKRA 120 S D+ NGL+GL + A M+ERV+V +G L+G +P G+ IGG+INL+ KRA Sbjct: 199 GLTSGDVGVNGLFGLASGNRMPAVMIERVDVLKGPGTLLHGISPEGS-IGGSINLVTKRA 257 Query: 121 SSEPTTQFTAGIESGGQTYMAADIGRRFGPDDRLGLRLNAVRRAGGTAVDNENRELNMAT 180 EP T+ TA +S Q + D+GRRFG D G+R N V R G ++ ++ Sbjct: 258 EDEPLTRLTALYQSRRQPGVQVDLGRRFGTQDAWGIRFNTVLRRGEASIAGGRQDAGAGA 317 Query: 181 IGVDYRGNGFRLSADLGLQEYNLSATRPSVRIATAPAGYVPSVPG-ASTNYGQKWFYSNE 239 + +DYRG G+R S D Q N S RP V G++P V + G F+S Sbjct: 318 LALDYRGRGWRWSLDAYRQRENSSDFRPQV-------GFLPGVTALPAPPSGDLDFFSGN 370 Query: 240 RDLFG----TVRGEWDLAQDVTSWFALGMRQGTENNSLATPNVNAANGNFTSNRFDNSRE 295 + F R E +L++ ++++ A+G R+ +L T +V+A+ N + ++ Sbjct: 371 QLSFQDDALLTRVEVELSEQLSAYAAVGQRRSATQQNLPTGSVDASGAGSVRNAYYDTAS 430 Query: 296 DYVWTGEVGIRGKFATGALKHSVSASASSYWQDSRNAYAMSTNVATTGNLYSPGSSAQPA 355 + + + G+R + ATGA++H VS + Q + NAY +S + ++ +LY+P + Sbjct: 431 RTL-SADAGLRLQAATGAVRHGVSLGVTRLRQQAGNAYLVSAD-SSAYSLYAPAT----- 483 Query: 356 LNFFGGSLANPQTTIKTQLSSIALADTLSVLEDRLQLTLGGRYQRLKTINYDFNTHLQGD 415 L + P+ L S++L DTL +LEDRLQL +G R Q ++ ++D + Q Sbjct: 484 LPVISAARTEPRKAYDMTLDSLSLTDTLRLLEDRLQLLVGARRQSVRYDSFDTVSGAQLS 543 Query: 416 YYNNGTVTPVAGLVYKLTKEVSLYGNYIEGLQPGTKVSDTTATNFGAMLAPYKSKQKEVG 475 Y ++P+ GLV K +SLY N GL GT V T N G +LAPY+S+Q E G Sbjct: 544 SYEASAISPLLGLVVKPVAGLSLYANTTSGLTRGTIVP-TGLANAGQVLAPYRSRQLEAG 602 Query: 476 VKYDAGKIGLTVAVFSIEKPNVITVGPAA 504 K D G++ A F I+ P+ + A+ Sbjct: 603 AKLDWGRVMTQAAWFQIDNPSAVITTQAS 631 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 245 bits (626), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 180/502 (35%), Positives = 272/502 (54%), Gaps = 23/502 (4%) Query: 1 VGFLGNKDFLETPFNSIAYTEQLIKDQQAKGVGDVLLNDPTIRVTRGYGNYQESYMIRGF 60 +G LG +D L+TPF+++ YT + IK+ QA+ VGDV+ ++ ++R T G G + +SY IRG Sbjct: 83 LGVLGTQDVLDTPFSTLNYTVEGIKNLQARTVGDVITSEASVRNTNGDGGFGDSYQIRGL 142 Query: 61 ITNSDDLAYNGLYGLLPRQYVAAEMLERVEVFRGASAFLNGATPGGNAIGGTINLLPKRA 120 + +D +NGLYGL+ ++ MLERVEV +G + G P G G INL+ KRA Sbjct: 143 PVSVNDTGFNGLYGLVSLSRMSTAMLERVEVLKGPGTLMYGMGPAGGVGGA-INLVSKRA 201 Query: 121 SSEPTTQFTAGIESGGQTYMAADIGRRFGPDDRLGLRLNAVRRAGGTAVDNENRELNMAT 180 EP + TA Q + DIGRRFG D G+R+NA+ G T+V + ++ +M + Sbjct: 202 GEEPVSSLTATYVGSAQLGLQGDIGRRFGQDKEWGIRVNALYADGRTSVADNRQQQSMGS 261 Query: 181 IGVDYRGNGFRLSADLGLQEYNLSATRPSVRIATAPAGYVPSVPGASTN-YGQKWFYSNE 239 + +DY G R + D Q + RP I T +PS P +N Y ++ Sbjct: 262 LALDYTGRKLRWTLDAYTQHEDTRNFRPQFSIGTTS---MPSAPAGDSNLYPGNTLQIDD 318 Query: 240 RDLFGTVRGEWDLAQDVTSWFALGMRQGTENNSLATPNVNAANGNFTSNRFDNSREDYVW 299 + + R E+DL + +T++ A+G +G S + + +G TS R + V Sbjct: 319 KVV--ATRLEYDLTEQLTAYGAIGYHEGATAQSFPSATITGLDGA-TSVRNGYYDQKVVS 375 Query: 300 T-GEVGIRGKFATGALKHSVSASASSYWQDSRNAYAM-STNVATTGNLYSPGSSAQPALN 357 T +VG+R +FATG ++H++S +A++ Q + Y + +T VA+ NLY P A P Sbjct: 376 TSADVGLRARFATGPVQHTLSMAANTLDQQTSYFYFVNATGVAS--NLYQPAPLA-PVTA 432 Query: 358 FFGGSLANPQTTIKTQLSSIALADTLSVLEDRLQLTLGGRYQRLKTINYDFNTHLQGDYY 417 G L PQ+ +T+LS +AL DTLS+ + RL LT G R Q++ + ++ + Sbjct: 433 ARGEPL--PQS--QTRLSGLALTDTLSIADGRLLLTGGLRRQQVYSNSFSTRSSS----- 483 Query: 418 NNGTVTPVAGLVYKLTKEVSLYGNYIEGLQPGTKVSDTTATNFGAMLAPYKSKQKEVGVK 477 N +PV G+V K + +SLY NY GL G + N G APYK+KQ E GVK Sbjct: 484 NKIGYSPVLGVVVKPLENLSLYANYTAGLSAG-GFAGAQYANAGQAFAPYKTKQYESGVK 542 Query: 478 YDAGKIGLTVAVFSIEKPNVIT 499 D G++ T AVF IE+ N T Sbjct: 543 LDWGRVTTTAAVFQIERANSST 564 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 139/512 (27%), Positives = 223/512 (43%), Gaps = 56/512 (10%) Query: 9 FLETPFNSIAYTEQLIKDQQAKGVGDVLLNDPTIRVTRGYGNYQESYMIRGFITNSDDLA 68 L+TP + T +KDQQ++ + DV+ ND +I Y E++ IRGF + A Sbjct: 69 LLDTPASVSVVTSAQMKDQQSRLLSDVVKNDASINENYAPVGYYENFSIRGFTLDPAS-A 127 Query: 69 Y--NGLYGLLPRQYVAAEMLERVEVFRGASAFLNGATPGGNAIGGTINLLPKRASSEPTT 126 Y NGL + Q +A E ERVE +G + G G A GG +N + KR ++ Sbjct: 128 YRVNGL-TVAGEQTIALENKERVEFLKGVA----GLQAGVVAAGGLVNYVTKRPAN--VR 180 Query: 127 QFTAGIESGGQTYMAADIGRRFGPDDRLGLRLNAVRRAGGTAVDNENRELNMATIGVDYR 186 T G +S G Y+A D+G FG + GLR+NA + V N + + A++ + Sbjct: 181 SITLGTDSNGSRYLATDLGALFGEHKQFGLRINAAHEDIHSYVSNGDGWRDFASLSATW- 239 Query: 187 GNGFRLSADLGLQ---EYNLSATRPSVRI-----ATAPAGYVPSVPGASTNYGQKWFYSN 238 +SA +Q EY A R AT P+G PS + Q Sbjct: 240 ----AISARTLVQFDAEYQQKAQRSVAGYQLLGGATLPSGVSPSTMLTPQPWSQP---VR 292 Query: 239 ERDLFGTVRGEWDLAQDVTSWFALGMRQGTENNSLATPN--------VNAANGNFTSNRF 290 + + +R + + D + G + ++ LA P AANG+F + Sbjct: 293 DSSVNARLRIDTEFNADWRGYVQAGRSRAVIDDYLAFPYGSGNGASPTFAANGDFDVYDY 352 Query: 291 ----DNSREDYVWTGEVGIRGKFATGALKHSVSASASSYWQDSRNAYAMSTNVATT---G 343 D R D V + GKFA+G ++H ++ + SR S ++ G Sbjct: 353 RVPNDERRNDEVQAVAI---GKFASGWVQHELTLGMAM----SRRIVDKSDGISVLVGQG 405 Query: 344 NLYSPGSSAQPALNFFGGSLANPQTTIKTQLSSIALADTLSVLEDRLQLTLGGRYQRLKT 403 N+Y+ G+ PA N + + ++ ++ +D + R Q+ GGR L Sbjct: 406 NIYN-GTPVLPAAN---AVIPAAYRNLDSRQKALFFSDRMQ-FSQRWQVLAGGRQVWLNE 460 Query: 404 INYDFNTHLQGDYYNNGTVTPVAGLVYKLTKEVSLYGNYIEGLQPGTKVSDTTATNFGAM 463 +++ + D N P L++K + +SLYG+Y E L G+ + +NF Sbjct: 461 QSFNSTGAVTRDTSRN-LFLPQLALIFKPVQNLSLYGSYAETLSLGSS-APFWVSNFPVT 518 Query: 464 LAPYKSKQKEVGVKYD-AGKIGLTVAVFSIEK 494 L P ++Q E GVKY+ + ++ LT AVF K Sbjct: 519 LPPSVARQLEAGVKYEFSPELALTAAVFRTRK 550 >gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iron transport protein [Herbaspirillum seropedicae SmR1] Length = 798 Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 133/543 (24%), Positives = 221/543 (40%), Gaps = 82/543 (15%) Query: 9 FLETPFNSIAYTEQLIKDQQAKGVGDVLLNDPTIRVTRGYGN--YQESYMIRGFITNSDD 66 L+ P + ++++ Q A+ + D+L N P I T G GN + + + IRGF ++ Sbjct: 89 LLDLPQSITVVPKEVLTQQNAQNLQDILKNVPGITFTSGEGNLGWGDMFTIRGF-SSEQS 147 Query: 67 LAYNGL--YGLLPRQYVAAEMLERVEVFRGASAFLNGATPGGNAIGGTINLLPKRASSEP 124 L +G+ G+ R LE+VEVF+G + +G + AIGG++NL+ K A + Sbjct: 148 LTVDGVRDAGMSSRN--DTFNLEQVEVFKGTGSIESGVS----AIGGSVNLVSKEARLDD 201 Query: 125 TTQFTAGIESGGQTYMAADIGRRFGPDDRLGLRLNAVRRAGGTA---VDNENRELNMATI 181 + G+ S G T AD+ + D LRLN +++ A V +R+ A++ Sbjct: 202 FYNTSFGVGSAGYTRFTADLNHQL--DATSALRLNLMKQQNHVAERDVVKYDRQGIAASL 259 Query: 182 GVDYRGNGFRLSADLGLQEYNLSATRPSVRIATAPAGYVPSVPGASTN--YGQKWFYSNE 239 G+ G R+ D+ Q+ + + + I G V +P S N YG + Sbjct: 260 GLGL-GTRTRIFFDVFHQDDD-NIPDTGLPIQRGTGGSV--MPYVSRNAWYGSTTYTQQT 315 Query: 240 RDLFGTVRGEWDLAQDV-----TSW-----------------FALGMRQGTENNSLATPN 277 T R E D + V T W + G GT + + Sbjct: 316 TTDALTARVEHDFSDAVKIRNQTRWERADNLSVLSPARFNAANSAGASLGTSLGYAGSGS 375 Query: 278 VNAANGNFTSNRFDNSREDY---------------VWTGEVGIRGKFATGALKHSVSASA 322 + AA+G + + F N+ Y + + + KF TGA++H +S Sbjct: 376 LTAASGILSYSDFTNTANRYGVLRGNDFGTSKRYTILDNQSDLSLKFDTGAIRHELSTGV 435 Query: 323 SSYWQDSRNAYA-MSTNVATTG-----NLYSPGSSAQPALNFFGGSLANPQTTIKTQLSS 376 Y R Y + VAT ++ +P S+ GG+ + T + Sbjct: 436 DLY----RETYGDLPRTVATPSGALGFDMSNPTVSSASVATLKGGAGLESRVTN----AG 487 Query: 377 IALADTLSVLEDRLQLTLGGRYQRLKTINYDFNTHLQGDYYNNGTVTPVAGLVYKLTKEV 436 + +ADT+ + Q RY R K + + G ++ GLVYK + Sbjct: 488 LYVADTMK-FSPQWQFLTALRYDRWKAVTSTRGATTASS--SAGALSGRLGLVYKPLENA 544 Query: 437 SLYGNYIEGLQPGTKVSDTTATNFG----AMLAPYKSKQKEVGVKYDA--GKIGLTVAVF 490 SLY Y QP + T +G + +P +K +E+G K+D ++ LT AVF Sbjct: 545 SLYLTYARAAQPSALGATTNNAIYGSASASAYSPAVAKTRELGGKWDVLNKRLALTGAVF 604 Query: 491 SIE 493 E Sbjct: 605 RTE 607 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,750,504 Number of extensions: 128829 Number of successful extensions: 403 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 389 Number of HSP's successfully gapped: 10 Length of query: 797 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 704 Effective length of database: 1,179,515 Effective search space: 830378560 Effective search space used: 830378560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)