BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0021.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311107|ref|YP_003775199.1| transmembrane NADH dehydrogenas...   370   e-104
gi|300311912|ref|YP_003776004.1| DNA polymerase III subunit delt...   123   2e-29

>gi|300311107|ref|YP_003775199.1| transmembrane NADH dehydrogenase I
           subunit M [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  370 bits (951), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/213 (84%), Positives = 196/213 (92%)

Query: 1   MMQSTFPLLSLAIWCPVAFGVLVLAVGRDDNPSIARWLALLGAVVSLLVTIPLVLHFDAA 60
           MMQSTFP+LSLAIW P+ FG+LVLA+GRD NP +ARWLAL G++V L+VT PL+ HFD  
Sbjct: 1   MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPL 60

Query: 61  AHGYQFVEKTPWIDRFNISYFLGIDGLSLWFIPLTAFITVIVVLAGWEVIQKRVGQYMGA 120
           AHGYQFVEKTPWIDRFNISYFLG+DG+SLWF+PLTAFITVIVVLAGW VIQKRV QYMGA
Sbjct: 61  AHGYQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120

Query: 121 FLILSGLMIGVFSALDGMLFYVFFEATLIPMFIIVGVWGGANRVYAAFKFFLYTLLGSLL 180
           FLILSG+M+GVFSALD MLFY FFEATLIPMFIIVGVWGG NRVYAAFK FLYTLLGSLL
Sbjct: 121 FLILSGIMVGVFSALDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180

Query: 181 MLIALIYLYIVSGGSFEIPTWHQLPLSMIEQKL 213
           MLIALIYLY VSGGSFEIPTWHQ+PLSM+EQK+
Sbjct: 181 MLIALIYLYYVSGGSFEIPTWHQVPLSMLEQKI 213


>gi|300311912|ref|YP_003776004.1| DNA polymerase III subunit delta
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 68/83 (81%)

Query: 226 TPVAELVGWQQRWLYDLFALKSGGPIRYYPRYSKELGALSGRIDTVTIAAALKAANDRRA 285
           TP A+LVGW QRWLYDL +LKS G +RYYPRY KELG L+ R+D + ++ AL+   DRRA
Sbjct: 262 TPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAERVDALALSRALRGMGDRRA 321

Query: 286 IADHPLSARLFIEEMLIEYSSLF 308
           IADHPLSA+LFIEEMLI+Y+ LF
Sbjct: 322 IADHPLSAKLFIEEMLIDYAGLF 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 885,310
Number of extensions: 34734
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)