BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0012.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311917|ref|YP_003776009.1| signal peptide protein [Herbasp...   115   3e-27
gi|300311916|ref|YP_003776008.1| hypothetical protein Hsero_2604...    82   2e-17

>gi|300311917|ref|YP_003776009.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  115 bits (287), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 91  QETFFELLSDSTRANDCRLPSTGVSQEWERILSSIFICSPEYGTRASTVVRVPIVGEPVL 150
           +ETFFE+L+D+TRANDCRLP TG+  E ER+LS IFI SP+YGTR S+VVRVPIVGEPVL
Sbjct: 176 EETFFEMLTDATRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSSVVRVPIVGEPVL 235

Query: 151 SEHVSDPVTSCQSP-PATEPQQKKSPCKLKLK 181
           +EHV DP+    S  PAT+ +  + PCK +L+
Sbjct: 236 TEHVVDPMAMQYSAEPATD-KACRIPCKPRLQ 266


>gi|300311916|ref|YP_003776008.1| hypothetical protein Hsero_2604
          [Herbaspirillum seropedicae SmR1]
          Length = 99

 Score = 82.4 bits (202), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 1  MDLYIYYRVPVGKSAQLEQQAAALQARLSQQHQVATELKRRPQDKDGMHTWMEVYLDTP- 59
          MDLYIYYRV   ++  L  +   +QA L  +  +A  LKRRP ++DG+ TWME+Y D P 
Sbjct: 1  MDLYIYYRVGTAQAISLFGKIKGVQAMLQARLGIAGALKRRPGEQDGLQTWMEIYPDIPP 60

Query: 60 ---DGFESILEEALTSSGLPALIDGQRHTEYF 88
             D F   L +AL   G   LI G+RH E F
Sbjct: 61 AQADAFSRTLAQALADCGAADLISGERHVEQF 92


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 537,717
Number of extensions: 19188
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)