BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0011.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311103|ref|YP_003775195.1| NADH dehydrogenase I subunit I ...   290   3e-80

>gi|300311103|ref|YP_003775195.1| NADH dehydrogenase I subunit I
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  290 bits (743), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/155 (95%), Positives = 151/155 (97%)

Query: 10  FGSLMLRELFKGLALTGRYLFARKITIQFPEEKTPQSPRFRGLHALRRYPNGEERCIACK 69
           FGSLMLRELFKGLALTGRYLF RKIT+QFPEEKTP SPRFRGLHALRRYPNGEERCIACK
Sbjct: 8   FGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERCIACK 67

Query: 70  LCEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHILEYHG 129
           LCEAVCPAMAITIESEQR DG+RRT+RYDIDLTKCIFCGFCEESCPVDSIVETHILEYHG
Sbjct: 68  LCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHILEYHG 127

Query: 130 EKRGDLYYTKEMLLAVGDRYENEIAAARTADAAYR 164
           EKRGDLYYTKEMLLAVGDRYENEIAAAR ADAAYR
Sbjct: 128 EKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 446,879
Number of extensions: 16349
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)