BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0010.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311102|ref|YP_003775194.1| transmembrane NADH dehydrogenas...   602   e-173

>gi|300311102|ref|YP_003775194.1| transmembrane NADH dehydrogenase I
           subunit H [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  602 bits (1553), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/359 (81%), Positives = 329/359 (91%), Gaps = 3/359 (0%)

Query: 1   MDQLIANINAVGPTYLGTAWPYVWTFVWSLLKILVVMVPLLGCVAYLTLWERKLIGWMHV 60
           MD LIA IN VGP YLG   P ++T VW+L+KILVVMVPLL CVAY+T WERKLIGWMHV
Sbjct: 1   MDHLIAQINTVGPAYLG---PTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHV 57

Query: 61  RLGPNRVGPAGLLQPIADALKLIFKEVTTPARASKVLFFIAPIMTIMPALAAWAVIPFGP 120
           RLGPNRVGPAGLLQPIADA+KLIFKE++TP++A+K LF++AP+MTIMPALAAWAV+PF P
Sbjct: 58  RLGPNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSP 117

Query: 121 EAVIANVNAGLLFVMAITSMEVYGVIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLV 180
           E V+ANVNAGLL++MAITSMEVYG+IIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLV
Sbjct: 118 EHVLANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLV 177

Query: 181 IVLMVSGSLNLIDIVTSQGKGYFADHGLGFLSWNWLSLLPIFVIYIVSGIAETNRHPFDV 240
           +VLMVSGSLN+ DIV  Q +G+FA  GL FLSWNWL LLPIFVIY VSG+AETNRHPFDV
Sbjct: 178 VVLMVSGSLNMTDIVMGQTQGHFASMGLNFLSWNWLPLLPIFVIYFVSGVAETNRHPFDV 237

Query: 241 VEGESEIVAGHMIEYSGMSFAMFFLAEYANMWLISILTALLFLGGWASPLSILDFIPGWI 300
           VEGESEIVAGHMIEYSGMSFAMFFLAEYA M LISILTALLF GGW++P+S LDFIPGWI
Sbjct: 238 VEGESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGWI 297

Query: 301 WLGIKTFFIVSLFIWVRASFPRYRYDQIMRLGWKVFIPLTLVYLVIVATWMQTSWNIWK 359
           WLG+KTFF +SL++W+RASFPRYRYDQIMRLGWKVFIPLTLV+LV+VA W+Q+ WNIWK
Sbjct: 298 WLGLKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVAIWIQSPWNIWK 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,838
Number of extensions: 49992
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)