BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0009.p (729 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311101|ref|YP_003775193.1| NADH dehydrogenase I subunit G ... 1185 0.0 gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydroge... 171 2e-43 >gi|300311101|ref|YP_003775193.1| NADH dehydrogenase I subunit G [Herbaspirillum seropedicae SmR1] Length = 772 Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 615/729 (84%), Positives = 661/729 (90%), Gaps = 3/729 (0%) Query: 1 MCLVDVEKAPKPLPACATPVTAGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGE 60 MCLV+VEKAPKPLPACATPV AGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGE Sbjct: 47 MCLVEVEKAPKPLPACATPVNAGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGE 106 Query: 61 CQLQDLAVGYGSSTSRYEEEKRVVPPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMEL 120 CQLQDLAVGYG S+SRY+EEKRVV PKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMEL Sbjct: 107 CQLQDLAVGYGGSSSRYQEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMEL 166 Query: 121 GMLGRGEHSEITTFVGNTVNSELSGNMIDLCPVGALTSKPFRYAARTWELSRRKSVSPHD 180 GMLGRGEHSEITTFVG TV+SELSGNMIDLCPVGALTSKPFRY+ARTWELSRRKSVSPHD Sbjct: 167 GMLGRGEHSEITTFVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHD 226 Query: 181 SLGANLIVQVKGGKVMRVLPLENEAVNECWISDKDRFAYEALDSEERLTKPMLKQDGKWQ 240 S+GANLIVQVK GKVMRVLP ENE VNECWISDKDRFAYEALDSE+RLTKPMLKQDGKWQ Sbjct: 227 SVGANLIVQVKNGKVMRVLPFENEEVNECWISDKDRFAYEALDSEQRLTKPMLKQDGKWQ 286 Query: 241 EVEWQVALEYVAHGLRNIRHEHGASAIAALGTPYSTLEELTLLQKVVRGLGSENIDFRLR 300 EV+WQ ALEYVAHGLRNIRHEHGA AIAALGTPYSTLEEL+LLQK+VRG+GSENIDFRLR Sbjct: 287 EVDWQTALEYVAHGLRNIRHEHGADAIAALGTPYSTLEELSLLQKIVRGVGSENIDFRLR 346 Query: 301 QSDFALDHQVNPWLGMSIVEFSELNRALIIGSFLRKDHPLLTARLRQAVKSGAKISVLHA 360 QSDF LD Q+ PWLGMSIVEFS+LNR +IGSFLRKDHPLL+ARLRQ+ KSGAK+SVLHA Sbjct: 347 QSDFGLDGQIKPWLGMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHA 406 Query: 361 ADDDLLMPVANKIIAAPSAWLAALSGVVAAVAQAKGIAAPAGFENIEASQEAKQTAASLL 420 DDDLLMPVANKIIAAPSAWL+AL+ V AVA+AKG+AAP+ + + AS AK TAASLL Sbjct: 407 TDDDLLMPVANKIIAAPSAWLSALAEVAVAVAEAKGVAAPSAYAGVTASDAAKATAASLL 466 Query: 421 SGTSKAVLLGNAAAQHPQASQLHAAAQWIAEQTGAKLGYLTEGGNAVGGYLANAIPGKDG 480 SG +K V LGNAA QHPQA+QLHAAAQWIAEQTGAKLG LTEGGNAVGGYLANA+ Sbjct: 467 SGDAKGVFLGNAAVQHPQAAQLHAAAQWIAEQTGAKLGVLTEGGNAVGGYLANAV--PAA 524 Query: 481 ANALQAFAQPRKAYLLLNAEPELDSHDAQAAAAALKQAEMVVVMSAFKHGADYADVLLPI 540 A FAQPRKAYLLLNAEPELDS+D QAA+AALKQA+MVVVMSAFKHGADYADVLLPI Sbjct: 525 GKAAAVFAQPRKAYLLLNAEPELDSYDPQAASAALKQADMVVVMSAFKHGADYADVLLPI 584 Query: 541 APFTETSGTFVNAEGRAQSFNGTVKPLGDARPAWKVLRVLGNLLGLQNFDYETSESIRAE 600 APFTETSGTFVN EGRAQSFNGTVKP GDARP WKVLRVLGNLL L+NF+YETSESIR E Sbjct: 585 APFTETSGTFVNTEGRAQSFNGTVKPAGDARPGWKVLRVLGNLLELENFEYETSESIRDE 644 Query: 601 VIGTETDLSARLNNLAKLAPQAGGVAANGALERLADVPIHFADAIARRSPALLQTQDGQA 660 ++G ETDLSARLNNLA + +A AA +ER+ADVPI+FAD IARRS LL+T+DGQA Sbjct: 645 LLGKETDLSARLNNLASVQLRAVSTAA-AEVERVADVPIYFADPIARRSAPLLETRDGQA 703 Query: 661 PKAWLSSALSQKLGIAAGDRVSVKQGQGSALLTAAIDKTLPENVVRVAAAHASTANLGSM 720 P+AWLS+AL+ KLG+A GD+V VKQG GSA LTAAIDK LPENVVRVAAAHASTA LG M Sbjct: 704 PRAWLSAALASKLGVAEGDQVKVKQGSGSAALTAAIDKKLPENVVRVAAAHASTAALGGM 763 Query: 721 FGAIVVEKA 729 FGAIVVEKA Sbjct: 764 FGAIVVEKA 772 >gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydrogenase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 957 Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 194/385 (50%), Gaps = 23/385 (5%) Query: 1 MCLVDVEKAPKPL---PA-CATPVTAGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICD 56 +CLV++EK + + PA C TP GM V+T + K + ++GVME + +HPLDC C Sbjct: 65 LCLVEIEKDGRKMKGYPASCTTPCEPGMKVQTQTPKLAEIRRGVMELYISDHPLDCLTCP 124 Query: 57 QGGECQLQDLA--VGYGSSTSRYEEEKRVVPPKDVGPLISMKEMNRCIHCTRCVRFGQEV 114 G C+LQD+A VG YE E KD + ++CI C RCVR +E Sbjct: 125 TNGNCELQDMAGVVGLREVRYGYEGENHTKMKKDESNPYFTYDPSKCIVCNRCVRACEET 184 Query: 115 AGVMELGMLGRGEHSEIT-----TFVGNTVNSELSGNMIDLCPVGALTSKPFRYAARTWE 169 G L + GRG S ++ F+ + S G ++ CP LT K + E Sbjct: 185 QGTFALTINGRGFESRVSAGQMEAFMESECVS--CGACVEACPTATLTEKTVIMLGQA-E 241 Query: 170 LSRRKSVSPHDSLGANLIVQVKGGKVMRVLPLENEAVNECWISDKDRFAYEALDSEERLT 229 S+ + + + +G + ++KG +V+R++P ++ N+ K RFA+ ++R+ Sbjct: 242 HSKVTTCA-YCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHKDRIL 300 Query: 230 KPMLKQ--DGKWQEVEWQVALEYVAHGLRNIRHEHGASAIAALGTPYSTLEELTLLQKVV 287 PM+++ + W+EV W+ AL Y A R I+ +HG +I + + T EE L+QK+V Sbjct: 301 NPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQKLV 360 Query: 288 R-GLGSENIDFRLRQSDFALDHQVNPWLGMS--IVEFSELNRA---LIIGSFLRKDHPLL 341 R G+ N+D R + + LG S F + ++ LI+G+ HP+ Sbjct: 361 RAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMKSDVILIMGANPAAGHPVF 420 Query: 342 TARLRQAVKSGAKISVLHAADDDLL 366 +++++ V+ GAK+ V+ +++ Sbjct: 421 ASQIKRRVRQGAKLIVIDPRTTEMV 445 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,172,370 Number of extensions: 89735 Number of successful extensions: 353 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 2 Length of query: 729 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 637 Effective length of database: 1,184,250 Effective search space: 754367250 Effective search space used: 754367250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)