BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0007.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E ...   207   1e-55
gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydroge...    70   5e-14

>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  207 bits (527), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 101/105 (96%)

Query: 1   MPAVAVQEVATFYNMFNTSPQGKHKITVCTNLPCLLSGGDRAAHHLKHTLGVGYKETTAD 60
           MPAVAVQEVATFYNMFNTSP GKHKITVCTNLPCLLSGG+RAAHHLK  LG+ Y+ETTAD
Sbjct: 55  MPAVAVQEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTAD 114

Query: 61  GQFTIVEGECMGACGDAPVMLVNNHRMCSWMSNDKIDALLEELKK 105
           GQFT++EGECMGACGDAPVMLVNNH+MCSWMSN+KIDALLEELKK
Sbjct: 115 GQFTLMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159


>gi|300310806|ref|YP_003774898.1| NAD-dependent formate
           dehydrogenase subunit gamma [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score = 69.7 bits (169), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 6   VQEVATFYNMFNTSPQGKHKITVCTNLPCLLSGGDRAAHHLKHTLGVGYKETTADGQFTI 65
           V  V +FY+ F   P G+H + VC    C   GG+  A H ++ LG G+ +T+ADGQFT+
Sbjct: 59  VHGVISFYHFFRQEPAGRHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTL 118

Query: 66  VEGECMGACGDAPVMLVNNHRMCSWMSNDKIDALLEELKK 105
               C+G C   P + +++  + + +  DK   L++  ++
Sbjct: 119 EPVYCLGQCAIGPNLTLDDE-LHARVDADKFKRLIQAKRE 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 344,679
Number of extensions: 12892
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)