BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0029.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527...   300   2e-82

>gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527
           [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score =  300 bits (767), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 230/370 (62%), Gaps = 9/370 (2%)

Query: 74  VDLTLANQEDGLSVQLQVSKGKLSDAERGALQKLSDGFQSAIDGISANPPGLKLDGLTQF 133
           +D+ L    +G++V  +VS+G LSD +R A+  L + F  AI G++  PP L LD L QF
Sbjct: 159 IDVQLGANAEGVAVDFKVSQGSLSDEDRAAVTALGEAFDQAIQGLAGRPPTLALDKLMQF 218

Query: 134 DTSLLASVDLHASVQVGGQAQTIDFHADSKQRSVSAAGPAGTLKVSVDLGNLAIVGTAKQ 193
           DT  LA++D  A++   G   ++    D  QRSV+A   AG +KV +D     + G+A+Q
Sbjct: 219 DTHQLAALDFTATL---GDDLSLQLQIDGSQRSVTAHTAAGAMKVGLDATAAPVTGSAQQ 275

Query: 194 QAEAIKRYLKQFDDAQSRGHGDASLVAMFKDAFKEMNSNVTNAAQQAREQSPAAIWLNKT 253
           +  AI  YL+QFD A  RG GDA L+A+FKDAF +++++ T   Q   + +PA +  + T
Sbjct: 276 RQRAIASYLEQFDAAARRGQGDAGLMALFKDAFAQLHASATAPVQ---DHTPALLAADAT 332

Query: 254 DQSMTTGLADFSASMTQEVTSPNPARQSEHDTFSYQTSQSSNVSGNGQLNRAITQQQESH 313
           D+ M +GL DFSAS+T     PNP R+ E D F YQ SQ +++SG GQ +R+I QQ +S 
Sbjct: 333 DRGMLSGLGDFSASITGNSAWPNPLRRDEVDGFDYQVSQRTSLSGAGQADRSIVQQAQSR 392

Query: 314 LSASYHESLQADLPLRLTTDKNSQNYTYHQIKDDASSKASIAYDKGVLVRATLEQSASQS 373
           L ASYH+SLQ DLPL+L + + SQNYTYHQI D A S+  I Y +G + +A L QSASQ 
Sbjct: 393 LKASYHQSLQPDLPLQLDSTRQSQNYTYHQIDDRADSQLEIGYRQGFMTQARLRQSASQD 452

Query: 374 TRVQKYMMGELVSDQTTPQNATLSRDFLDLLKPLQKKEGATGAADISRLNQALATINNLV 433
           +RV KY++GELVS   TP  A + RDF   L+  ++   A GA   SRL   L  I+ L 
Sbjct: 453 SRVSKYVLGELVSQTHTPLQAQIVRDFAAQLQDGKEARAADGAYRRSRL---LDGISELG 509

Query: 434 YLQPDPLALR 443
            LQ DP  +R
Sbjct: 510 LLQSDPQRVR 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.120    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,719
Number of extensions: 44032
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 132 (55.5 bits)