BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0023.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   357   e-100
gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   316   1e-87
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   166   1e-42

>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 197/231 (85%), Gaps = 1/231 (0%)

Query: 4   SCVNCSMHQLCLPMGLDDSDMNRLDQIIGRRRRVARGESLYRMDDPFRNLYAIRLGHFKT 63
           SC  C MHQLCLPMGLD+SDM RLD+IIGRR+ VAR + LYR+ D F  LYA+R+GHFKT
Sbjct: 40  SCTACGMHQLCLPMGLDESDMKRLDKIIGRRK-VARDDFLYRIGDRFTALYAVRVGHFKT 98

Query: 64  YQFNAGGEQQITGFQMAGELMGMDAISTDKHHCDVAALEDSEVCEIPFQRLEELFGMIPM 123
           YQ N  G++QITGFQM GEL+GMDAIST++H CD  AL+DSEVCEIPF RLE+LFG IP 
Sbjct: 99  YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158

Query: 124 LLRHFHRIMSQEITREQNAMLLLGNMRAEQRFAAFLINLSSRYAARGYSSTSFQLRMSRE 183
           LLRHFHRIMS EIT EQN ++LLGNMRAEQRFAAFL+NLSSRYAARGYSST FQLRM+R+
Sbjct: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218

Query: 184 DIGNYLGLTIESISRLVSKFRKLGWLGVDKREIQLLDPVRIKALAAGTETC 234
           D+GNYLGLTIESISRL+SKFRK G L V++R+++++D   +K LAAG + C
Sbjct: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269


>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  316 bits (809), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 148/234 (63%), Positives = 184/234 (78%)

Query: 1   MKTSCVNCSMHQLCLPMGLDDSDMNRLDQIIGRRRRVARGESLYRMDDPFRNLYAIRLGH 60
           ++ SC  CSMHQLCLPMGLD  DM RL+Q+I RRR+V R E+LYR++D F  LYAIRLGH
Sbjct: 21  LRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLGH 80

Query: 61  FKTYQFNAGGEQQITGFQMAGELMGMDAISTDKHHCDVAALEDSEVCEIPFQRLEELFGM 120
           FKT+Q N  G QQITGFQMAGEL+GMDAI    H C+  ALEDSEVCEIPF  LE+LF  
Sbjct: 81  FKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFRD 140

Query: 121 IPMLLRHFHRIMSQEITREQNAMLLLGNMRAEQRFAAFLINLSSRYAARGYSSTSFQLRM 180
           +P LLR FHR+MS EI+REQ  ML LG+M A+Q+ AAFL+NLSSRY +RGYSST FQLRM
Sbjct: 141 MPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRM 200

Query: 181 SREDIGNYLGLTIESISRLVSKFRKLGWLGVDKREIQLLDPVRIKALAAGTETC 234
           +RE+IGNYLGL +ES+SRL++ F+K G + V+ R+++L D   ++A+A G + C
Sbjct: 201 TREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALGNDPC 254


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  166 bits (420), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 140/230 (60%), Gaps = 1/230 (0%)

Query: 4   SCVNCSMHQLCLPMGLDDSDMNRLDQIIGRRRRVARGESLYRMDDPFRNLYAIRLGHFKT 63
           +C NC + + C P  L   +  + +Q++ RRRRV RGE  YR  D    ++ +RLG FKT
Sbjct: 17  TCRNCIVKKHCFPHDLSPEETAQFEQLVVRRRRVLRGEFAYRAHDECSKIFIVRLGSFKT 76

Query: 64  YQFNAGGEQQITGFQMAGELMGMDAISTDKHHCDVAALEDSEVCEIPFQRLEELFGMIPM 123
            + +  G   +  F   G+L+G++  S   +  D  ALEDS++CE+ F  LEEL   IP 
Sbjct: 77  VRVSRYGGMDVIAFHHTGDLLGIEGASHSAYEVDTIALEDSQICELSFVGLEELSRKIPR 136

Query: 124 LLRHFHRIMSQEITREQNAMLLLGNMRAEQRFAAFLINLSSRYAARGYSSTSFQLRMSRE 183
           L +   R +S E+T  Q   LLL   R+EQRFA FL++LS   +  G +ST F LRMSR 
Sbjct: 137 LHQQVWRRLSNEVTLMQQQSLLL-KARSEQRFAFFLLDLSRISSRCGNASTEFSLRMSRT 195

Query: 184 DIGNYLGLTIESISRLVSKFRKLGWLGVDKREIQLLDPVRIKALAAGTET 233
           DIG +LGLT ES+SRL+SKFRK G + V  R++++L P  ++ LA+G  +
Sbjct: 196 DIGLFLGLTNESMSRLISKFRKAGLIDVSVRKVRVLSPSTLEELASGATS 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,008
Number of extensions: 25923
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)