BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0022.p
         (89 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312496|ref|YP_003776588.1| transmembrane protein [Herbaspi...    57   4e-10

>gi|300312496|ref|YP_003776588.1| transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 83

 Score = 56.6 bits (135), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 2  QRIVPNILWASFLAAIAAEGCFFAWFDPDELLNLVSQR-DRLAAYTVGFFFLWLFCALSG 60
          QR +  ++W +FL A AAEG FF+ F+PD+L        + L AYTVGFF  W+  A+ G
Sbjct: 5  QRNIAIVIWVAFLMATAAEGIFFSIFNPDDLAMAAGHEWEALGAYTVGFFCFWVSFAICG 64

Query: 61 GLAFLLNLPGQREYL 75
           LA  L     RE L
Sbjct: 65 LLAVRLTQTLPRERL 79


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 298,467
Number of extensions: 10502
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,619,870
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,340,505
Effective search space: 40215150
Effective search space used: 40215150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 123 (52.0 bits)