BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0021.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312497|ref|YP_003776589.1| hypothetical protein Hsero_3199...    70   4e-14

>gi|300312497|ref|YP_003776589.1| hypothetical protein Hsero_3199
          [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 69.7 bits (169), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 9  PWYTHRWPWLLMLGPALVIAAGSFTIWLAVTREDAMVVGDYYKEGRAINQD 59
          PWY HRWPWLLM GPA+V+ AG FT WLA++R DA+V  DYYK+G+AIN+D
Sbjct: 16 PWYRHRWPWLLMAGPAVVVVAGVFTAWLAISRADALVADDYYKQGKAINKD 66


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.524 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 338,127
Number of extensions: 10340
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 124 (52.4 bits)