BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0020.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin t...   206   2e-54

>gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  206 bits (523), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 127/181 (70%)

Query: 70  AVAACIDACNGVMAKVALPPGLIRYSTERAMTTQLSLPEMRRRVLRPRVLAYTALLVLIV 129
             AAC+DAC+ VM K+  P GLIRYSTE A+    S  E+RRR++RPR+L Y A+L  ++
Sbjct: 304 GCAACVDACDSVMDKIKRPRGLIRYSTENAVEQGFSTAEIRRRLVRPRILIYGAILGAVI 363

Query: 130 AAFCTALALRTPLKLDIIRDRGVMAREVEDGMIENVYRLQIMNTGETAHRFHIDVSGIDG 189
           A F  +L +RTPLKLD+IRDRG M REVE+G+IENVYRLQI+NT E  HR+ +   G+ G
Sbjct: 364 ALFAGSLWVRTPLKLDVIRDRGSMGREVEEGIIENVYRLQIINTDERGHRYLVRAKGLAG 423

Query: 190 IRLATPAEVEIDAATTRAVPVRVRVPHGKGEHGSNKVAFELSAVDDPRLQVQEKAVFFVP 249
           + +     +E+ A  T +VPVRVR PHG GE GSNK+  EL A D P L V EKAVF VP
Sbjct: 424 LSVDPATPIEVAATQTVSVPVRVRAPHGAGEVGSNKIRIELEAEDQPALNVSEKAVFLVP 483

Query: 250 R 250
           R
Sbjct: 484 R 484



 Score =  102 bits (254), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 10/72 (13%)

Query: 4  PPPDI----------AVVNMYSAREDIYPREIKGRYASLRWVCLWLTQLVFYGLPWLQWN 53
          PPPD           AV+ MY+ARE IYPREI+GR+ASLRW+C++LTQLVFYGLPW+ WN
Sbjct: 11 PPPDTGDSKTGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWN 70

Query: 54 GRQAVLFDLGAR 65
           RQAVLFDL +R
Sbjct: 71 ERQAVLFDLASR 82


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,244
Number of extensions: 29238
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)