BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0017.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312499|ref|YP_003776591.1| cbb3-type cytochrome c oxidase ...   276   2e-75

>gi|300312499|ref|YP_003776591.1| cbb3-type cytochrome c oxidase
           subunit III transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score =  276 bits (705), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 146/176 (82%)

Query: 1   MPRWWMWLFYLTIVFALAYLFLYPGLGSYAGKLGWKSSEAYQSELSKADADYGPLFEKYL 60
           +PRWWMWLFYLTI F++ YL  YPGLG+  G LGW+S+  + +++  A+A YGPLF  YL
Sbjct: 63  LPRWWMWLFYLTIFFSIGYLVAYPGLGNLPGTLGWRSTGEHDADVKAAEAKYGPLFNHYL 122

Query: 61  QQDIKTVAADPQAHVIGERLFLTYCAQCHGSDARGSKGFPNLTDKDWLYGGDPEVIKTTI 120
           +QD+K VA D QAH IGERLFLTYCAQCHGSDARG+KGFPNLTD DWL+GG PE+IK TI
Sbjct: 123 KQDLKVVAGDSQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKETI 182

Query: 121 LHGRNGQMPSMAAALGSDKDVENVAHYVLSLSDSTHDPIKAVFGKSKFAVCAGCHG 176
           + GR+G MP MAAA+G+DKDV+NVA+YVLSLSDSTHDPIKA  GKSKFA C  CHG
Sbjct: 183 MKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSDSTHDPIKAELGKSKFAACMACHG 238



 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 70  DPQAHVIGERLFLTYCAQCHGSDARGSK--GFPNLTDKDWLYGGDPEVIKTTILHGRNGQ 127
           DP    +G+  F   C  CHG   +G++  G PNL+DK WLYGG  + IK TI  GR+  
Sbjct: 219 DPIKAELGKSKFAA-CMACHGPGGKGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNT 277

Query: 128 MPSMAAALGSDKDVENVAHYVLSLSD 153
           MP+    LG  K V  +A YV SLS+
Sbjct: 278 MPAFGEFLGEPK-VHVLAAYVWSLSN 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 963,965
Number of extensions: 39454
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)