BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0015.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312500|ref|YP_003776592.1| cbb3-type cytochrome c oxidase ...   317   4e-88

>gi|300312500|ref|YP_003776592.1| cbb3-type cytochrome c oxidase
           subunit II transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 204

 Score =  317 bits (813), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 163/212 (76%), Positives = 175/212 (82%), Gaps = 10/212 (4%)

Query: 1   MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPVAGLKPYSPLRLAGRDV 60
           MKFSHEWIEKNPWLLI LV+LVVS+GGL EIVPLFFQ+STTEP+AGLKPYS LRLAGRDV
Sbjct: 1   MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60

Query: 61  YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGRVGARYSDEWHXL 120
           YIREGCYNCHSQMIRP RAETERYGHYSVAGE VYDHPFQWGSKRTG   AR        
Sbjct: 61  YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLAR-------- 112

Query: 121 ARVGARYSDEWHRIHLNNPRDVVPESNMPGYPWLAKTKLDPKSIAPKMRALHRLGVPYTD 180
             VG RYSDEWHR HL+NPRDVVPESNMP YPWL + KLD   I  +M+AL R+G PYT+
Sbjct: 113 --VGTRYSDEWHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTE 170

Query: 181 EEIKAAPDELADKTEEDALIAYLQGLGTQIKT 212
           E+IK AP EL  KTE+DALIAYLQGLG  IK 
Sbjct: 171 EDIKNAPAELVGKTEQDALIAYLQGLGVLIKA 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,612
Number of extensions: 26714
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)