BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0014.p (636 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312501|ref|YP_003776593.1| cbb3-type cytochrome c oxidase ... 783 0.0 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 72 1e-13 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 68 2e-12 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 67 4e-12 >gi|300312501|ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/472 (79%), Positives = 428/472 (90%) Query: 162 VDRELNYNYRIVKQFTIATVVWGVIGMLAGVFIAAQLAWPALNFDIPWLTYGRLRPLHTN 221 + +E +YNY +V+QFT+AT++WGV+GML GV IAAQLAWP LN +PWL++GRLRPLHTN Sbjct: 1 MSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 Query: 222 AVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAEFTFWGWQLVLVSAAITLPMGFTRGKE 281 AVIFAFG C L ATSYYVVQRTCQVRLFSD LA FTFWGWQLV+V AAI+LP+G TRGKE Sbjct: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 Query: 282 YAELEWPIALLITVVWVTYAVVFFGTLIKRKVRHIYVANWFFGAYIIAVALLHVVNGASM 341 YAELEWP+ +LI VVWV YAVVFFGTLIKRKV+HIYVANWF+GA+IIAVA+LH+VNG +M Sbjct: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 Query: 342 PVSMWKSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 401 P ++ KSYS Y+G QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIV Sbjct: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 Query: 402 HFWALIFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGIMTLSGAWHKLR 461 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWH+LR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 Query: 462 SDPLLKFMIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHSGALGWVGFITMGSI 521 +DP+LKF++VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVHSGALGWVGF+TMG++ Sbjct: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 Query: 522 YYLIPRMSGKREMWSVRLVDLHFWVATIGVVLYIASMWIAGVMQGLMWRAVNADGTLTYT 581 YYLIPR+SGK +MWS L+++HFWVATIG+VLYIA+MWIAGVMQGLMWRAVNADGTLTYT Sbjct: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 Query: 582 FAEGVKATYPYYVIRFTGGLLYLAGMVMMAYNTFRTMRDGQPVEARIPVLAT 633 F E VKATYPYYVIR GGL+YL+GM++MAYNT+RTMR + A IP + Sbjct: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTN 472 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 21/146 (14%) Query: 72 LRPEAQAVVAHFQRLGKSLVLLSGDRHDVAQRVADRLGIPTALGDCLPESKLSFVQGLQR 131 ++P AQA +A R+G +LSGD AQ+VA LGI + LP K V L++ Sbjct: 561 IKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQEVRAEVLPADKAEAVTALRQ 620 Query: 132 GGA-IVAMVGDGVNDAXSCAHSRHGTIPGEGVDRELNYNYRIVKQFTIATVVWGVIGMLA 190 GGA +VAMVGDGVNDA + A + G G D + Q T++ G G++A Sbjct: 621 GGAQVVAMVGDGVNDAPALAAADVGMAMSTGTD--------VAMQAAGVTLMHGDPGLVA 672 Query: 191 GVFIAAQLAWPALNFDIPWLTYGRLR 216 DI TY ++R Sbjct: 673 DA------------IDISRRTYAKIR 686 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/76 (51%), Positives = 50/76 (65%) Query: 71 ALRPEAQAVVAHFQRLGKSLVLLSGDRHDVAQRVADRLGIPTALGDCLPESKLSFVQGLQ 130 ALR +A A VA F+ LG +LLSGD+ +V VA GI C P+ KL +V+ LQ Sbjct: 645 ALRTDAVATVAAFRALGLRTILLSGDQPEVCAEVAAAAGISEVQAACTPQGKLDYVRNLQ 704 Query: 131 RGGAIVAMVGDGVNDA 146 R GA+VA+VGDG+NDA Sbjct: 705 RDGAVVAIVGDGINDA 720 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Query: 61 EAQAVVAHFXALRPEAQAVVAHFQRLGKSLVLLSGDRHDVAQRVADRLGIPTALGDCLPE 120 + Q +VA +RP ++ VA + LG +++L+GD AQ +A + GI A GD LPE Sbjct: 584 QPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDARGDQLPE 643 Query: 121 SKLSFVQGL-QRGGAI-VAMVGDGVNDAXSCAHSRHG 155 KL ++ L QR G V MVGDG+NDA + A + G Sbjct: 644 DKLKAIEELSQRHGVRGVGMVGDGINDAPALARADIG 680 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.140 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,116,620 Number of extensions: 93329 Number of successful extensions: 360 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 7 Length of query: 636 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 545 Effective length of database: 1,188,985 Effective search space: 647996825 Effective search space used: 647996825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 134 (56.2 bits)