BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0010.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   358   e-100

>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  358 bits (919), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 204/248 (82%), Gaps = 9/248 (3%)

Query: 1   VISMAQTLAKVIQAGPDRISLYNYAHLPHLFKPQRRILEAQLPGAEAKLDMLALAIRRLT 60
           V+SM++TLAKVI A PDRI++YNYAH+P LFK QR+I E  LP A++KLDML+L IR+LT
Sbjct: 236 VMSMSRTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLT 295

Query: 61  DAGYVYIGMDHFALPTDDLAIAQQQGRLHRNFQGYSTHAESDMVSCGVSAISAVASTYSQ 120
            AGYVYIGMDHFA PTDDLAIAQQQGRLHRNFQGYSTH+E+D+V+CGVSAISAV  +YSQ
Sbjct: 296 SAGYVYIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQ 355

Query: 121 NVKTLDAYYDAIDKNELPIVRGLRMNMDDVLRRLIIQRLMCNFELSIASIETAYPITFAS 180
           N KTLD YY  ++ + LPI RG+++ MDDVLRRLIIQRLMCNFELSI S+E AYPI F  
Sbjct: 356 NEKTLDDYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFRE 415

Query: 181 YFEAELEGLHRLEQDGLVVIDDEWISVTMKGRLLIRNICMVFDRYL---------QSRPA 231
           YF +E+E L +LE+DGL+ I+ EWI+V  KGRLLIRNICMVFDRYL         Q++ A
Sbjct: 416 YFASEMEKLKQLEEDGLIKIEPEWITVEPKGRLLIRNICMVFDRYLNQEREKAASQNKDA 475

Query: 232 EQRYSRTI 239
            QRYS+T+
Sbjct: 476 PQRYSQTV 483


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,459
Number of extensions: 26859
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)