BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0009.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   273   8e-75
gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen II...    80   2e-16

>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  273 bits (698), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 124/183 (67%), Positives = 143/183 (78%)

Query: 16  FDAQLIRKLSQSGPRYTSYPTADRFSDTFGYRDYLQAVAGLRTRGSRNPLSLYVHIPFCE 75
            +  ++R++ Q GPRYTSYPTADRF+  F   DYL AV+  R+  +   LSLY+HIPFC+
Sbjct: 18  MNKSVLRRMDQRGPRYTSYPTADRFTSDFAVTDYLHAVSDRRSMSAWRALSLYLHIPFCD 77

Query: 76  NICYYCACNKIVTKNRDKAGIYLSYLKHEIEMQGKLFDGMNQIEQLHLGGGTPTYISDAQ 135
            ICYYCACNKIVTKNR KA +YLSYLK EI MQG LF GMNQ+EQLH GGGTPTY+SD Q
Sbjct: 78  TICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQ 137

Query: 136 MADLMTHLQRWFRFAGDEVGEYSIEVDPRTVSAERVASLRTQGFNRLSLGVQDFDPLVQR 195
           M+DLM H++  F  A D VGEYSIE+DPRTVS ERV  LR QGFNR+SLGVQDFDP VQ 
Sbjct: 138 MSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVERVHKLRQQGFNRISLGVQDFDPEVQL 197

Query: 196 AVN 198
           AVN
Sbjct: 198 AVN 200


>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III
           oxidase oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 3/127 (2%)

Query: 64  PLSLYVHIPFCENICYYCACNKIVTKNRDKAGIYLSYLKHEIEMQGKLFDGMNQIEQLHL 123
           PLSLYVH P+C   C YC  N    K+      YL  L+ ++E    L  G  +I  + +
Sbjct: 40  PLSLYVHFPWCVRKCPYCDFNSHEVKDGFPEQEYLDALRLDLEQALPLIWG-RKIYSIFI 98

Query: 124 GGGTPTYISDAQMADLMTHLQRWFRFAGDEVGEYSIEVDPRTVSAERVASLRTQGFNRLS 183
           GGGTP+ +S A +  L++ L+       D   E ++E +P T  A++  S R  G NRLS
Sbjct: 99  GGGTPSLLSAAGLDRLLSDLRTLLPLDADI--EITMEANPGTFEADKFRSYRDSGINRLS 156

Query: 184 LGVQDFD 190
           +G+Q F+
Sbjct: 157 IGIQSFN 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 610,700
Number of extensions: 24406
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)