BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0027.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   332   2e-92

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  332 bits (852), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/359 (52%), Positives = 246/359 (68%), Gaps = 12/359 (3%)

Query: 4   PFRLEPRTSPSRVMQFLSPLAAGVITFVIGWIVFGALGQSPSAAMRVFFIDPLSDRNGWA 63
           P RLE R +PSR M +LSP+ A V T ++G ++F ALG+ P A ++VF IDP + +   +
Sbjct: 8   PLRLELRGAPSRTMTYLSPVIAIVATLLLGALLFLALGKDPLAGLKVFLIDPFNGKRAIS 67

Query: 64  ELLLKAAPLCLIGIGLSLCYRANIWNIGAEGQMLVGGMAASGVALFFKPD----SGAWIM 119
           ELLLK+ PL L  +GL++C+RA+IWNIGAEGQ  VG + +  + ++        SG   +
Sbjct: 68  ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGVSGGMGL 127

Query: 120 PIMLAASVLGGMLWAAIPALLRTRFNTNEILVSLMFTYIAANLLIYLVSGPWRDPQGMNF 179
            +M+ A V+GG LWAAI A LR +FN NEILVSLM TY+A  LL++ V+GP +DP GMNF
Sbjct: 128 VLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNF 187

Query: 180 PLTKEFSEQATFALLPVDWHWSFWEGTRLNSSVLIVLLVLPVAWIFMQRSFMGYRMTVGG 239
           P +K FS +    +LP     +   GTRL+    + ++   +  IFM RS  G+ + VGG
Sbjct: 188 PQSKVFSSEF---MLP-----TLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGG 239

Query: 240 MAPMAARYAGFSDAGAVWLALLSSGGLAGLAGVSEVAGTIGQLQSNWSPGYGFTAIIVAF 299
           +AP AARYAGFS   A+W++LL SG  AGLAG  E+AG IGQL  + SPGYGF AIIVAF
Sbjct: 240 VAPHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAF 299

Query: 300 VGRLHPVGVALASLLMALLYLGGEAGQTALQLPKSISSVFQGLLLFTLLACDLLITYRL 358
           +GRLHP+G  L  L+M+LLYLGGE  Q+ L LP +I+ VFQG+LLF LLACD LI YRL
Sbjct: 300 IGRLHPIGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRL 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,815
Number of extensions: 39478
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)