BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0026.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313659|ref|YP_003777751.1| amidase family protein [Herbasp...    76   2e-15
gi|300309358|ref|YP_003773450.1| amidase family protein [Herbasp...    75   2e-15

>gi|300313659|ref|YP_003777751.1| amidase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 11  AFEVIYESSLAASLDNFSPQQQAFLDPGLVRNAKRGARHSVQTLIRAFGAREEMGREMNL 70
           AF+VI   +  A  D    +  A L P    N + GA  S+     A   +  + R    
Sbjct: 309 AFDVIRAEAFVAGFDAAYRRDPASLGPNTRANYEMGAAMSLLDCAWAQSEQTRIFRRFQQ 368

Query: 71  FHEKFDLLITPQLAVTAF---DCGSDVPPGRGMREWLDWSPFTYMFNMTQQPAAAVPCGF 127
            +E++DL+++P   V+ F   +       G  +  +  W   TY+  +   PA ++PCG 
Sbjct: 369 LYERYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLATNPAISLPCGR 428

Query: 128 DVNGLPVALQIVGPRHGDKRVLQAARAFEQ 157
           D  G+P  LQ+ GP  GD RVL  A A EQ
Sbjct: 429 DHRGMPFGLQVTGPFRGDARVLACAAALEQ 458


>gi|300309358|ref|YP_003773450.1| amidase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 29  PQQQAFLDPGLVRNAKRGARHSVQTLIRAFGAREEMGREMNLFHEKFDLLITPQLAVTAF 88
           P ++  L P      + G   +   + RA  AR +  R ++   E+FD L+ P   +  F
Sbjct: 333 PARRGLLKPEAQWEVESGQYLTAADVFRASMARSDWYRAIHKLFEQFDYLLLPSAQMFPF 392

Query: 89  DCGSDVP---PGRGMREWLDWSPFTYMFNMTQQPAAAVPCGFDVNGLPVALQIVGPRHGD 145
           D  +  P    GR M  +  W        +   PA +VP GF  NGLP+ +QI+GP   D
Sbjct: 393 DVATKWPRNVAGREMDTYHRWMEVVIGPTLAGLPAMSVPVGFGANGLPMGMQIIGPSRDD 452

Query: 146 KRVLQAARAFEQIRPFA 162
           + VLQ A A E +RP++
Sbjct: 453 RGVLQLAYALEGLRPWS 469


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 606,504
Number of extensions: 24829
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)