BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0024.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   375   e-105
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...   174   1e-44

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  375 bits (962), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/377 (52%), Positives = 247/377 (65%), Gaps = 10/377 (2%)

Query: 1   MMNRARINQMAIVGVATILAAG------FSLARAQQPQRTALPSPLPIAFVYLGNPGDAG 54
           +  RA +  +A +  AT++  G       +   A          PL +AFVY+G  GDAG
Sbjct: 3   ISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPAADPLKVAFVYIGPVGDAG 62

Query: 55  WTYAHDQGAKDAEAKFGSKVKVTRVENVPESA-DAERVIRDLASKGNKIIIGTSFGFQDF 113
           WT+AHD+G K  E KFG KVK T VEN+PESA DAERV R LA+ GNK+I GT+FG+ + 
Sbjct: 63  WTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYMEA 122

Query: 114 ALKVAKNFPNTVFLQ-SGYKLAKNYGAFDVRMYQGAYLAGVLAGAKTKTNTLGFVASIPI 172
            LKVAK FP+  F   +G+K A N   +DVR Y+GAYLAGV+AG  +K+  LG VAS+PI
Sbjct: 123 MLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASVPI 182

Query: 173 PEVVRNINAYTLGARSVNPKVQTKVVWINSWYNPGKEKQAAETLIGQGADVLLQNTDSTT 232
           PEV+RNI+++TLGARSVNPK  T VVW+N W++PGKE++AA TLIGQG DVL+QNTDS  
Sbjct: 183 PEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDSAA 242

Query: 233 VLQTAQEKGVSGFGWDSDMQKFAPKAHLASVVIKWGAYYNTAVQDVMDGKWKSEHIWWGM 292
           V+QTAQEKGV  FGWDSDM  F PKAHLA+ VI WG YY   VQ V+DG WKS   W G+
Sbjct: 243 VVQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVYYTARVQAVLDGSWKSSTSWIGL 302

Query: 293 PEKAIAMEKVNDQLLPADGIKSYEMQLAKIVGGWSP-FTGPIKDQAGVVKVAAGVSLSDA 351
            E  I +   N + LPAD     E +   IV G +P + GPIKD AG   +       D 
Sbjct: 303 KENGIDLAAFNPE-LPADVKTLVEERKKGIVDGSAPIWKGPIKDNAGKEVLGKDAVADDG 361

Query: 352 ELVPMNWFVEGVQGNLP 368
            L  + ++VEGV G +P
Sbjct: 362 FLHGIKFYVEGVDGKVP 378


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 175/339 (51%), Gaps = 12/339 (3%)

Query: 39  PLPIAFVYLGNPGDAGWTYAHDQGAKDAEAKFGSKVKVTRVENVPESADAERVIRDLASK 98
           PL + F+Y+G   D G+  +H Q A  A  K    VKV   E VPE+   ++ +  +  +
Sbjct: 29  PLTVGFIYVGARDDFGYNQSHAQAA--AVIKKMPGVKVIEEEKVPETVAVQKTMEAMIQQ 86

Query: 99  -GNKIIIGTSFGFQD-FALKVAKNFPNTVFLQSGY-----KLAKNYGAFDVRMYQGAYLA 151
            G  ++  TSFG+ D   LK+A+ +P       G      K   N G++   + +  YL+
Sbjct: 87  DGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCGGLWTAGKHPMNVGSYFGYIEECEYLS 146

Query: 152 GVLAGAKTKTNTLGFVASIPIPEVVRNINAYTLGARSVNPKVQTKVVWINSWYNPGKEKQ 211
           GV+AG  +K+  L F+A+ PIP+V+RNINA+TLGA+SV+P +   V++   W  P KE +
Sbjct: 147 GVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPAITCHVIFTGDWSLPVKEAE 206

Query: 212 AAETLIGQGADVLLQNTDSTTVL-QTAQEKGVSGFGWDSDMQKFAPKAHLASVVIKWGAY 270
           AA +LI QG DV+  + D   V+ +TA+++GV   G+ +     APK +L      W   
Sbjct: 207 AANSLIDQGCDVITCHVDGPKVIVETAEKRGVMTTGYHASQASLAPKGYLTGAEWNWATP 266

Query: 271 YNTAVQDVMDGKWKSEHIWWGMPEKAIAMEKVNDQLLPADGIKSYEMQLAKIVGGWSPFT 330
           Y   V+  ++GK     +  G+ +  + M      +      K+ E++   + G +  F 
Sbjct: 267 YTEIVKATLEGKPMINFLRGGLKDNFVKMSPYGAAVSAPAKKKADEIKAQMLAGKFQIFK 326

Query: 331 GPIKDQAGVVKVAAGVS--LSDAELVPMNWFVEGVQGNL 367
           GPIKD  G   + AG +   +D  L  MN+ V GV G +
Sbjct: 327 GPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAGVVGQV 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,174,454
Number of extensions: 49360
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)