BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0023.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 96 2e-21 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 92 4e-20 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 89 3e-19 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 68 5e-13 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 65 7e-12 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 1/212 (0%) Query: 5 TQEIQDRVFDAIVSRKLVPGAKINERELADAFGVSRTIVRQALSRLQQEGLVTISPKRAT 64 + +I R+ +AI++++L PG ++ E++LAD F VSRT VR+AL+ L G+VT+S +R Sbjct: 10 SSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGW 69 Query: 65 TVSKPTIEEAHQLFDAIAMME-GAAIERLSKSISTSQMERLKQHVKDEHTASQAGDHEVA 123 V +PT +A + F+A ++E G + + + + + +L++H+ E A D Sbjct: 70 FVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGADVGAR 129 Query: 124 NDLARDFHALFVGFVDNALIIKAHSQLLKQQALITALFKTDFDYDCLQGDHMAVVDFLAE 183 + L DFH + N+L+ + L + L L ++ + +H+ +V+ L Sbjct: 130 SYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALER 189 Query: 184 GKVQEAKDKLADHYKLVIRGYQFKNGSNFHEP 215 G +++A+ + DH + V G S+ EP Sbjct: 190 GDLEQAEQLMHDHLQHVESGLNQVRSSDPLEP 221 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 10/211 (4%) Query: 16 IVSRKLVPGAKINERELADAFGVSRTIVRQALSRLQQEGLVTISPKRATTVSKPTIEEAH 75 I +++L PGAK+ E LA + VSRT +R AL L ++ LV + P + VSKPT+EE Sbjct: 22 IAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGAFVSKPTVEETR 81 Query: 76 QLFDAIAMMEGAAIERLSKSISTSQMERLKQHVKDEHTASQAGDHEVANDLARDFHALFV 135 +F +E A + + RL+ H++ E A + +V + L DFH L Sbjct: 82 NIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVRSTLLSDFHILLA 141 Query: 136 GFVDNALIIKAHSQLLKQQALITALFKTDFDYDCLQGDHMAVVDFLAEGKVQEAKDKLAD 195 V N ++ +L + ALIT L+++ D C +H A + G + A + + Sbjct: 142 RIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAARAGDTERAMELMEH 201 Query: 196 HYKLVIRGYQFKNGSNFHEPAPGLLPPRNNI 226 H V + F EP G PR ++ Sbjct: 202 HLLHVEQALAF-------EPKAG---PRKDL 222 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 1/200 (0%) Query: 1 LAMKTQEIQDRVFDAIVSRKLVPGAKINERELADAFGVSRTIVRQALSRLQQEGLVTISP 60 +A++ + QD ++DAI+ +L P K+ E+ L + +R VR+ L+RL EG+V + Sbjct: 25 VAVEERMYQD-IYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEA 83 Query: 61 KRATTVSKPTIEEAHQLFDAIAMMEGAAIERLSKSISTSQMERLKQHVKDEHTASQAGDH 120 R ++ P+ E +F+ ++E A +E+L + T Q+ L++ V++E GD Sbjct: 84 NRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDR 143 Query: 121 EVANDLARDFHALFVGFVDNALIIKAHSQLLKQQALITALFKTDFDYDCLQGDHMAVVDF 180 L+ FH NAL+++ +L+ + L+ A + C +H V++ Sbjct: 144 PRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEA 203 Query: 181 LAEGKVQEAKDKLADHYKLV 200 L +G ++ A+ +A H L Sbjct: 204 LEKGDIKAAQAHMAHHLHLC 223 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 9/222 (4%) Query: 6 QEIQDRVFDAIVSRKLVPGAKINERELADAFGVSRTIVRQALSRLQQEGLVTISPKRATT 65 +++ R+ D I S +L+PG E E+A GVSRT +R AL RLQ+EG + + +R Sbjct: 11 EQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 Query: 66 VSKPTIEEAHQLFDAIAMMEGAAIERL-SKSISTSQMERLKQHVKDEHTASQAGDHEVAN 124 V + L+D ++E AA+++L S+ +++++ +L E A Q +VA Sbjct: 71 VCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAVKVAQ 130 Query: 125 DLARDFHALFVGFVDNALIIKAHSQLLKQQALITAL-FKTDFDYDCLQGDHMAVVDFLAE 183 L FH V N + + H+++ ++ ++ L F D +H ++ +A+ Sbjct: 131 -LDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAK 189 Query: 184 GKVQEAKDKLADHY---KLVIRG---YQFKNGSNFHEPAPGL 219 K EA+ L H KL +R + EP L Sbjct: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAAL 231 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 64.7 bits (156), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 8/180 (4%) Query: 11 RVFDAIVSRKLVPGAKINERELADAFGVSRTIVRQALSRLQQEGLVTISPKRATTVSKPT 70 ++ AIV ++ PG+KI+E ELA +G+SR +R+A+ RL+ + L+ P V T Sbjct: 24 KIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGARVVSLT 83 Query: 71 IEEAHQLFDAIAMMEGAAIERLSKSISTSQMERLKQ----HVKDEHTASQAGDHEVANDL 126 +E +LF +EG A ++ +S ++++ L++ H KDE A QAG + Sbjct: 84 LEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDE--AFQAGRGYYQQEG 141 Query: 127 ARDFHALFVGFVDNALIIKAHSQLLKQQALITALFKTDFDYDCLQ--GDHMAVVDFLAEG 184 DFH + N ++ + L Q A + + + + Q +H ++D LA+G Sbjct: 142 DYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHRILDALADG 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 656,436 Number of extensions: 23754 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 7 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)