BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0017.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310154|ref|YP_003774246.1| hypothetical protein Hsero_0819...   216   9e-58

>gi|300310154|ref|YP_003774246.1| hypothetical protein Hsero_0819
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  216 bits (550), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 119/161 (73%)

Query: 5   MLDLTRDQPPEWMQFARTAHVQWQEIDAMIERTHATVRAHSTLLVAILRAGSPIAALLAR 64
           MLDLT+ QPP WM F RT  V WQEI+ M++     +     LLVAILRAGSP+AAL+AR
Sbjct: 1   MLDLTQSQPPAWMDFRRTRIVGWQEIEDMVQPHLHEIATRYDLLVAILRAGSPVAALIAR 60

Query: 65  KTGLPLDYLLCSRSNPAPSFIGGEGRAPRGHDILLIDDVCGSGWTFERAKAYCEALGNRV 124
            TG+P+DYL+CSR N  P F+ G  RAPRG  ILL+DDVCGSGWTFERA+AYC ALGN  
Sbjct: 61  HTGMPIDYLVCSRRNAEPHFLDGTVRAPRGRRILLVDDVCGSGWTFERARAYCAALGNVT 120

Query: 125 RTYSVYRCEGTEMYRPDYSMSMDAGTYLRWPWEYQRESEMP 165
            T+SV+RC+  EMY PDYS+      YLRWPWEYQ ESEMP
Sbjct: 121 GTFSVFRCDAPEMYVPDYSLPAAPDDYLRWPWEYQAESEMP 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,483
Number of extensions: 24534
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)