BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0016.p
         (591 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310153|ref|YP_003774245.1| hypothetical protein Hsero_0818...    83   5e-17

>gi|300310153|ref|YP_003774245.1| hypothetical protein Hsero_0818
           [Herbaspirillum seropedicae SmR1]
          Length = 481

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 151/347 (43%), Gaps = 45/347 (12%)

Query: 6   SNPNQHYYHLEGDATQMKTAQRGTFVPTASNKLSNRFLQSDNKLVRGFGGFIKSMRQTDL 65
           +N    Y+H   D T+  TA R T+ P+ +NK++N+F + D   +    GF  ++R  DL
Sbjct: 8   ANITAGYFHHVDDTTKTATALRATYQPSLNNKITNKFARMD---MPRLAGFTNAVRDFDL 64

Query: 66  TLRGAGNRVRSGVQGASINCRAGFEKMSGDQEKKAAAEEKRQSSQASLKLKTDLKHERLN 125
           ++R + NR R       I+          D   K    +KRQ  QAS++ + + K  R  
Sbjct: 65  SIRQSWNRNRLASARNKID----------DLRAKGEGGDKRQRLQASVE-RREHKDVRHT 113

Query: 126 YKKTI-NAAEPGKLDDVVAESTRLFQSDLEDKGFEPSGGLAQHTLPRHDKRYLR-NDDFH 183
            K+ I  AA    L+D    +  L Q+ L    ++P  GL      R   RYL    D H
Sbjct: 114 DKRAIGEAAVHQALEDETKAAQDLLQARLASLQYQPLEGLRAVEHERVSSRYLSATGDGH 173

Query: 184 AVAGNYATPGQLRQRVATAASRQHDNGDMGTVRALKRSIQYGAIGVSNGFQLGKQGMYAM 243
            +  +   P +L   VA   S  +D G  G     + ++Q+  +G+  G  L  +G   +
Sbjct: 174 RIKIHSEGPPRLAAMVANQVSAGYDRGSSGISNRTRSAMQHALVGI-QGAALSIKG--GV 230

Query: 244 AATLAPAQSEERDSFSRA---ADKARDQRHLGSAALDGNIALTHAFNDIGSRRSADVEQQ 300
           A  LA ++  ++ S +R    A +A ++R +  A+L GN+AL  A+          VEQQ
Sbjct: 231 AGQLAGSRILDQGSRARMDVRAARAGEKREMLQASLRGNVALNAAYQQT-------VEQQ 283

Query: 301 LVPKG----------------YRPVQGETGAPPRRTSYLARKLNTYF 331
           +   G                Y       G  P +T +  RK+N ++
Sbjct: 284 IAAAGRRQDARAAPGGEDLPEYVVRASHEGVKPPQTRFWDRKVNQFY 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,679,391
Number of extensions: 66022
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 500
Effective length of database: 1,188,985
Effective search space: 594492500
Effective search space used: 594492500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)