BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0014.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310157|ref|YP_003774249.1| dihydrodipicolinate synthase/N-...    94   3e-21
gi|300310152|ref|YP_003774244.1| hypothetical protein Hsero_0817...    60   6e-11
gi|300310109|ref|YP_003774201.1| hypothetical protein Hsero_0774...    59   3e-10

>gi|300310157|ref|YP_003774249.1| dihydrodipicolinate
           synthase/N-acetylneuraminate lyase N-terminal protein
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score = 94.4 bits (233), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%)

Query: 6   FRSFVDAIAALANVPRPVGQRDHARLELDGVIFTLMEGSGLDAGTVAYLCDFGALPDTPD 65
           F  F+D I  LA +P P    + A +E+D V FTL++ SG     +   CDFG LP+ PD
Sbjct: 6   FYRFIDKICELARIPHPQSLYERADIEVDEVKFTLVDASGKSGRCMHVYCDFGPLPNGPD 65

Query: 66  RAEILQCLLECNLLMFGVDTPAFAVNSETDHVMLTGRARLAGIDARKLLAAFVHFSAQAR 125
           R  +   LL+ NL  F    P F++++ ++HV+L  R       A + L      +AQA+
Sbjct: 66  RQTVCYRLLDLNLECFANREPCFSIDTTSNHVVLMDRVPFDAETALETLNMLAKLAAQAK 125

Query: 126 RWQKTYFLDGRRKVRSKTQHR 146
           +W+  YFL         T  R
Sbjct: 126 QWRSGYFLPSEEAASGTTVKR 146


>gi|300310152|ref|YP_003774244.1| hypothetical protein Hsero_0817
           [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score = 60.5 bits (145), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 6   FRSFVDAIAALANVPRPVGQRDHARLELDGVIFTLMEGSGLDAGTVAYLCDFGALPDTPD 65
           F    +    LA+V +P        + +DGV F +     L    +   CDFG  P    
Sbjct: 6   FIELTNDFCELAHVDQPELMVQGNAIAVDGVDFFVQYDEELSPDHLIVYCDFGE-PPPAR 64

Query: 66  RAEILQCLLECNLLMFGVDTPAFAVNSETDHVMLTGRARLAGIDARKLLAAFVHFSAQAR 125
           R E  Q LLE N+L++  ++PAF +  +   V+   + RL  + A +L+  F++ + QAR
Sbjct: 65  RLEAYQALLEANMLIYAANSPAFMLGPDQ-RVVFGYQCRLNEVRAPELMNIFLNLAEQAR 123

Query: 126 RWQKTYFL 133
            W+  +FL
Sbjct: 124 DWRTDHFL 131


>gi|300310109|ref|YP_003774201.1| hypothetical protein Hsero_0774
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 24  GQRDHARLELDGVIFTLMEGSGLDAGTVAYLCDFGALPDTPDRAEILQCLLECNLLMFGV 83
           G     +L +D V F L  G  L   +V   C FGALP T  R  IL  LLE    +FGV
Sbjct: 24  GMHQAVQLCIDDVDFILFYGGVLAPDSVVMHCTFGALP-TASRDRILLRLLETQSHLFGV 82

Query: 84  DTPAFAVNSETDHVMLTGRARLAGIDARKLLAAFVH-FSAQARRWQKTYFLD 134
             P F+ ++   H+ L  R  L      +     +H F+  A RW+K +FLD
Sbjct: 83  CAPVFSCDAAQQHITLMCRFPLRDDQPTESTLELLHLFAGMAMRWRKDHFLD 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 481,997
Number of extensions: 19704
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)