BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0010.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310146|ref|YP_003774238.1| general protein secretion prote...   201   1e-52
gi|300310148|ref|YP_003774240.1| hypothetical protein Hsero_0813...   121   1e-28
gi|300310149|ref|YP_003774241.1| type IV prepilin PilV protein [...   118   1e-27

>gi|300310146|ref|YP_003774238.1| general protein secretion protein
           BfpE [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  201 bits (510), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 106/116 (91%)

Query: 3   LAXAGVTVEKALMRLADMAHPWLRERLAGALLGVRSGLNCGEALRNAGYEFPSREVIDDL 62
           L  AGVTVEKALMRL+ +A PWLRERL GALLGVRSGLNCGEALRN GY FPSREVIDDL
Sbjct: 230 LQSAGVTVEKALMRLSGVAQPWLRERLDGALLGVRSGLNCGEALRNTGYGFPSREVIDDL 289

Query: 63  CVYAEYRGFAEALKLMADEWMEEGVEIISLRMKLLNGISIVVLAVVIGWLVTGFFG 118
           CVYAEY+GFAEALKL+ADEWME+GVE+ISLRMK++NG ++V +A+VIGWLV GFFG
Sbjct: 290 CVYAEYKGFAEALKLLADEWMEQGVEMISLRMKVVNGFAVVTMAMVIGWLVIGFFG 345


>gi|300310148|ref|YP_003774240.1| hypothetical protein Hsero_0813
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 86/132 (65%)

Query: 205 MWNIAVLAVMLAVAGAYATRSLQTGDRLQHQAVISLAREMAMYREAVIRYFEIYDIHDAS 264
           MWN  VLAVM+A AG Y TR+LQ  D+   +   + A E+ +YR AVI YF  +D+ + S
Sbjct: 1   MWNAVVLAVMIAAAGVYTTRNLQAVDQAHQELASADAAEVGIYRNAVIDYFSDHDVVNTS 60

Query: 265 VSYATLAASGALPGWTRMAQGTSSAIWNNYRDAAGIIYIYASSLPAQNIVGELVGVSHQS 324
           VS A+L +   LP W+R+ Q + +  W NYRDA G+IY+YA+SLP +N+  EL  ++  S
Sbjct: 61  VSTASLKSGAYLPSWSRLYQQSGALSWTNYRDADGVIYVYATSLPPRNLAAELARLARNS 120

Query: 325 ILVGTYQATAST 336
           +L+G Y +  +T
Sbjct: 121 VLLGVYDSAHAT 132


>gi|300310149|ref|YP_003774241.1| type IV prepilin PilV protein
           [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 67/77 (87%)

Query: 336 TGGAADGGHLVSNLFTDGSGMLSTDYLYRNAVPGHPELNRMNTPIRMANAALVSNGASCL 395
           +GG+ADGGHL SNLF DG G ++ D+LYRNAVPG PELNRMNTPIRMA+ ALV+ G+SCL
Sbjct: 192 SGGSADGGHLASNLFYDGPGQVAADFLYRNAVPGRPELNRMNTPIRMASNALVALGSSCL 251

Query: 396 NASGVAEPGVALDSGTR 412
           N++GVAE G+A+DS TR
Sbjct: 252 NSAGVAEAGMAIDSATR 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,922
Number of extensions: 44871
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)