BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0037.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847...   239   8e-65

>gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847
           [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  239 bits (611), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 3   DQVVALKEQVKKLSAEREQLSTSANAAESQLNIERSAQAQLAGQIKTLVTENNKLKEDLS 62
           +QV  L EQVKKLSAE E+L +++NA++++L I +SAQAQLA Q+K L  E N+ KEDL+
Sbjct: 56  EQVEQLSEQVKKLSAENERLQSASNASQNELKIAQSAQAQLATQVKNLEAEINRQKEDLA 115

Query: 63  FFESLLPTNVGVDGITIQRLKAEVVVPNQVRYQLLAIQGEKG-RQFVGNLQLSVTVLQGG 121
           FF+SLLPTN+G  GITIQR KAE   PNQ+RY++L +QG  G +QF GNLQLSV ++QGG
Sbjct: 116 FFDSLLPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGG 175

Query: 122 KSVIINFPEQNATDQARYKLAFKYYQRVEGVLTLPEGATIKAIQARVLERGQMRAQQSVN 181
           KS IINFPE N+TD ARY+LAFKYYQRVEG+L +PEGA+IK++  RVL+RGQ+RAQQSV+
Sbjct: 176 KSAIINFPESNSTDLARYRLAFKYYQRVEGLLNIPEGASIKSVAVRVLDRGQVRAQQSVD 235

Query: 182 L 182
           L
Sbjct: 236 L 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 438,695
Number of extensions: 15230
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)