BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0035.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845...   211   7e-57
gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831...   160   2e-41
gi|300312140|ref|YP_003776232.1| transcription regulator protein...    68   1e-13
gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142...    66   5e-13

>gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  211 bits (538), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 102/103 (99%), Positives = 103/103 (100%)

Query: 3   FSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQLL 62
           FSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTM+KNGVQLL
Sbjct: 18  FSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQLL 77

Query: 63  IDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 105
           IDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS
Sbjct: 78  IDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 120


>gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831
           [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  160 bits (405), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 91/105 (86%)

Query: 1   MVFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 60
           ++F+DSA AKV++LI EEGN +LKLR++V GGGCSGF+YGF FD+ VNEDD  + +NGV 
Sbjct: 13  LIFTDSAVAKVSELISEEGNTELKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNGVS 72

Query: 61  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 105
           LL+D+MS QYL GAEI Y++ LEG++F+IKNPNATTTCGCGSSFS
Sbjct: 73  LLVDAMSMQYLNGAEIGYEEGLEGSRFIIKNPNATTTCGCGSSFS 117


>gi|300312140|ref|YP_003776232.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 68.2 bits (165), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 1   MVFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 60
           +  +++AA +V   + +     + LR+ V+  GCSG  Y   + ++    D     +GV 
Sbjct: 3   ITLTENAARRVHAFLAKRS--AVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60

Query: 61  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 105
           +LID  S  YL G E+D+  +     F   NPNA   CGCG SF+
Sbjct: 61  VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFA 105


>gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142
           [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 66.2 bits (160), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 1   MVFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNGVQ 60
           +  ++ AA  +++ +E  G   + LR+ V+  GCSG  Y   + +  + +DT    +GV+
Sbjct: 3   ITLTEKAAKHISRYMERRGK-GIGLRLGVRTTGCSGLAYKLEYVDEQSSEDTVFESHGVR 61

Query: 61  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 105
           + +D  S  Y+ G E+D+  +     F  +NPN    CGCG SF 
Sbjct: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFR 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 315,988
Number of extensions: 11468
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 4
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)