BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0031.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312322|ref|YP_003776414.1| two component hybrid sensor his...    79   1e-16
gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas...    74   5e-15
gi|300311949|ref|YP_003776041.1| two component response regulato...    71   3e-14
gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C...    70   7e-14
gi|300310698|ref|YP_003774790.1| AraC family two-component hybri...    69   1e-13

>gi|300312322|ref|YP_003776414.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 79.0 bits (193), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 12  ILIVDDSATIRRSAALFLGQAGHRVVLAEDGFDALSQLADCTPDLIFCDVLMPRLDGYQT 71
           +L+VDDS T+R      L   G++V +A DG D  + +   + DL+  D+ MPR+DG + 
Sbjct: 655 VLVVDDSLTVRELERKLLTNRGYQVTVAVDGMDGWNAVRADSFDLVITDIDMPRMDGIEL 714

Query: 72  CALVKKNARFHATPVVMLSSKDGLFDRARGAIVGAAAFMTK-PFTEDGMLQAVRTYAG 128
            +L++  A   + PV+++S KD   DR RG   GA  + TK  F ++ +LQAV    G
Sbjct: 715 VSLIRGAANLQSLPVMIVSYKDREEDRQRGLEAGADHYFTKSSFHDESLLQAVTDLIG 772


>gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score = 73.6 bits (179), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%)

Query: 9   SFTILIVDDSATIRRSAALFLGQAGHRVVLAEDGFDALSQLADCTPDLIFCDVLMPRLDG 68
           S TIL VDDS ++R+     L  AG+ V  A DG DAL +    T DL+  D  MPR+DG
Sbjct: 2   SKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDG 61

Query: 69  YQTCALVKKNARFHATPVVMLSSKDGLFDRARGAIVGAAAFMTKPFTEDGMLQAVRTYAG 128
                 +++   +   P++ML+++     +A+G   GA  ++ KPF    + + VR   G
Sbjct: 62  LTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 121


>gi|300311949|ref|YP_003776041.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 71.2 bits (173), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 7   RHSFTILIVDDSATIRRSAALFLGQAGHRVVLAEDGFDALSQLADCTPDLIFCDVLMPRL 66
           RH   +LIVDD        +  L  +GH V++A DG  AL +L   TPDLI  D +MP +
Sbjct: 8   RH--VVLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGI 65

Query: 67  DGYQTCALVKKNARFHATPVVMLSSKDGLFDRARGAIVGAAAFMTKPF 114
           DG++TC  +K+  R    PVV ++         RG  VG   ++TKP 
Sbjct: 66  DGFETCRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPI 113


>gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 70.1 bits (170), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 12  ILIVDDSATIRRSAALFLGQAGHRVVLAEDGFDALSQL-ADCTPDLIFCDVLMPRLDGYQ 70
           IL+VDDS+T+R     FL + G  V LA DG D LS+L  D    L+  DV MP +DG  
Sbjct: 4   ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63

Query: 71  TCALVKKNARFHATPVVMLSSKDGLFDRARGAIVGAAAFMTKPFTEDGMLQAVRTYAG 128
               ++      +  ++ML++++    + RG   G   ++ KPF  + +L   +   G
Sbjct: 64  MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121


>gi|300310698|ref|YP_003774790.1| AraC family two-component hybrid
           sensor/regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score = 69.3 bits (168), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%)

Query: 12  ILIVDDSATIRRSAALFLGQAGHRVVLAEDGFDALSQLADCTPDLIFCDVLMPRLDGYQT 71
           IL+VDD+   R   + FL + G R+ +  DG D   +     PDLI  D+ MP  DG  +
Sbjct: 19  ILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGLTS 78

Query: 72  CALVKKNARFHATPVVMLSSKDGLFDRARGAIVGAAAFMTKPF 114
           C L+K N      PV+ LS+     ++  G   GA  ++TKPF
Sbjct: 79  CRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPF 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 415,593
Number of extensions: 15037
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 30
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 30
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)